Browse Element(s) Details


OsAffx.11683.1.S1_at

Description tigr:9629.m06028
TID=OsAffx.11683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6124010/11Gamma interferon inducible lysosomal thiol reductase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61260NANA1+35769811..35770761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11683.1.S1_at--449--7971Chr01:35760891..35761032 (25 bp)
GGATCGATTACCTGCCAGCATGGAG
LOC_Os01g61240
OsAffx.11683.1.S1_at--393--1551Chr01:35761061..35761085 (25 bp)
AGCTTGCGTGATCAGACTTTGGCCT
LOC_Os01g61240
OsAffx.11683.1.S1_at--344--3831Chr01:35761326..35761349 (24 bp)
CGGAACAGCATTTCCCTTTCATTAA
LOC_Os01g61240
OsAffx.11683.1.S1_at--396--5451Chr01:35761383..35761407 (25 bp)
GAACGCGTGGCAATCTTGCTTTCAA
LOC_Os01g61240
OsAffx.11683.1.S1_at--31--9731Chr01:35761404..35761428 (25 bp)
TCAAGAAACTGGTCTAGCCTCTCAA
LOC_Os01g61240
OsAffx.11683.1.S1_at--360--351NONE
ATAACTCAGGGTACGGCACACAGCT
NONE
OsAffx.11683.1.S1_at--1087--1551Chr01:35761930..35761954 (25 bp)
AGCTTCAACTCCAGTATGCTGCAGA
LOC_Os01g61240
OsAffx.11683.1.S1_at--46--9611Chr01:35761976..35762000 (25 bp)
TCATCAGTTTGTACCCTGGGTGACC
LOC_Os01g61240
OsAffx.11683.1.S1_at--590--2211Chr01:35762484..35762508 (25 bp)
ACAAGCCTGATCGATGTCCATGTTC
LOC_Os01g61240
OsAffx.11683.1.S1_at--980--3271Chr01:35762529..35762553 (25 bp)
CAAAAGTTGGCCGTTCTACTTGCCT
LOC_Os01g61240
OsAffx.11683.1.S1_at--1120--10591Chr01:35762553..35762577 (25 bp)
TTCTGCATCGCGGTGTGGTTCTGAC
LOC_Os01g61240
Target Sequence 
GGATCGATTACCTGCCAGCATGGAGAGGAGGAATGCCAACTCAATGCGATAGAAGCTTGCGTGATCAGACTTTGGCCTGA
CGCGGAACAGCATTTCCCTTTCATTAATTGCATTGAGCATTTAGCGCTGACTCAAAAATGGAACGCGTGGCAATCTTGCT
TTCAAGAAACTGGTCTAGCCTCTCAACCTGTTATGGACTGCTATAACTCAGGGTACGGCACACAGCTTCAACTCCAGTAT
GCTGCAGAGACGAATGCCCTTCAGCCTCCTCATCAGTTTGTACCCTGGGTGACCGTAAACGGGCGCCCCCTTGGTGATGA
TTACACAAATTTTGAAGCCTACATCTGCAGAGCTTATGATGGTGAACTTCCTGAGGCATGCAGGGGGAAACACCTCGCCA
TTGCTCAACAGACAAGAGCAAGCCGAGGAGGCAAGATACACAAGCCTGATCGATGTCCATGTTCTTGTAATGCAGAGGGA
TCCACAAAAGTTGGCCGTTCTACTTGCCTTCTGCATCGCGGTGTGGTTCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis