Browse Element(s) Details


OsAffx.23881.1.S1_x_at

Description tigr:9629.m06035
TID=OsAffx.23881.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein
LOC_Os01g61300NANA1+35793265..35793663hypothetical protein
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23881.1.S1_x_at--481--1911Chr01:35800971..35800995 (25 bp)
ACGTGATCGAGTTCCTGAGGTACCT
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--302--6391Chr01:35800967..35800991 (25 bp)
GATCGAGTTCCTGAGGTACCTGGAC
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--387--1371Chr01:35800800..35800824 (25 bp)
AGAGCGGCGGCACGCCCGAGTCCAA
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--1011--1751Chr01:35800746..35800770 (25 bp)
ACCTCCGCGAGGTGCGGGACTCGCA
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--916--9131Chr01:35800734..35800758 (25 bp)
TGCGGGACTCGCAGGCCAAGGCGCG
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--738--871Chr01:35800716..35800740 (25 bp)
AGGCGCGCGGCATCCCGTACGAGAA
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--534--5411Chr01:35800688..35800712 (25 bp)
GAAGCGCAAGCGCTCGCAGGCGGCG
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--585--7251Chr01:35800643..35800667 (25 bp)
GTCCGGCTCGTCTTCTGCTGCAGCT
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--42--9191Chr01:35800613..35800637 (25 bp)
TGCCGGTGGTGGAGACGCGGGCAGC
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--1032--4671Chr01:35800584..35800608 (25 bp)
GCGGTGCAGCTGCTACTACCACAGC
LOC_Os01g61310
OsAffx.23881.1.S1_x_at--825--9071Chr01:35800574..35800598 (25 bp)
TGCTACTACCACAGCTCAACCTGGA
LOC_Os01g61310
Target Sequence 
ACGTGATCGAGTTCCTGAGGTACCTGGACCAGTTCGGGAAGACCAAGGTGCACGCGTCGGGGTGCGCCTTCTACGGCCAG
CCCAGCCCGCCGGGGCCGTGCCCGTGCCCGCTGCGTCAGGCGTGGGGATCCCTCGACGCGCTCATCGGCCGCCTCCGCGC
CGCGTACGAGGAGAGCGGCGGCACGCCCGAGTCCAACCCGTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGTGC
GGGACTCGCAGGCCAAGGCGCGCGGCATCCCGTACGAGAAGAAGAAGCGCAAGCGCTCGCAGGCGGCGCAGCCCGCCGGC
GTCGAGCCGTCCGGCTCGTCTTCTGCTGCAGCTGCAGCTGCCGGTGGTGGAGACGCGGGCAGCGGTGGCGGTGCAGCTGC
TACTACCACAGCTCAACCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23881.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis