Browse Element(s) Details


Os.19035.1.S1_at

Description gb:AK121100.1
DB_XREF= gi:37990723
TID=Os.19035.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter (B1088C09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full insert sequence.
FL= gb:AK121100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6140010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006879biological_processiron ion homeostasis
GO:0009639biological_processresponse to red or far red light
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19035.1.S1_at--305--551NONE
ATCCGACTATTCAGGTGGGTTGCAT
NONE
Os.19035.1.S1_at--866--8631Chr01:35832852..35832876 (25 bp)
TGGGTTGCATTTCTAGTCGTGTTGA
LOC_Os01g61400
Os.19035.1.S1_at--360--7651Chr01:35832801..35832825 (25 bp)
GGGAGGACCAGCTATTTTATTTCCA
LOC_Os01g61400
Os.19035.1.S1_at--277--3851Chr01:35832725..35832749 (25 bp)
CTGCAGGGCTGTTTTCGAGAATCTT
LOC_Os01g61400
Os.19035.1.S1_at--522--5251Chr01:35832707..35832731 (25 bp)
GAATCTTCCTTACGAGTTTGCACAT
LOC_Os01g61400
Os.19035.1.S1_at--719--7971Chr01:35832677..35832701 (25 bp)
GGATGCACTTATGAACCTGAAGCTT
LOC_Os01g61400
Os.19035.1.S1_at--652--5951Chr01:35832548..35832572 (25 bp)
GAGCAATGGACGTTTTCCTAGCCTT
LOC_Os01g61400
Os.19035.1.S1_at--1017--8711Chr01:35832524..35832548 (25 bp)
TGTCTACCACTAGGGATGTCCTTGG
LOC_Os01g61400
Os.19035.1.S1_at--760--6771Chr01:35832483..35832507 (25 bp)
GTTACTTATCTACTGTTTTATCCCT
LOC_Os01g61400
Os.19035.1.S1_at--1084--2591Chr01:35832429..35832453 (25 bp)
AACCCTTATTAGAATGCGTAGCCAC
LOC_Os01g61400
Os.19035.1.S1_at--478--6971Chr01:35832412..35832436 (25 bp)
GTAGCCACACTAGAAATGTCTCCAA
LOC_Os01g61400
Target Sequence 
ATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTA
TTTTATTTCCAACAAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGA
GAATCTTCCTTACGAGTTTGCACATGAGATGGATGCACTTATGAACCTGAAGCTTGAGGGATCAGTTGGTTAATTAGATG
GAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATG
AGCAATGGACGTTTTCCTAGCCTTGTCTACCACTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGT
TTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis