Browse Element(s) Details


Os.47928.1.S2_at

Description gb:AK099788.1
DB_XREF= gi:32984997
TID=Os.47928.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097A17, full insert sequence.
FL= gb:AK073766.1 gb:AK099788.1 gb:AK069312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6142011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47928.1.S2_at--261--8711Chr01:35841541..35841565 (25 bp)
TGTCTTTGGTCACTTCTATTTTATG
LOC_Os01g61420
Os.47928.1.S2_at--218--1351Chr01:35841469..35841493 (25 bp)
AGAGATTTCTTCTGATTGATTTCCA
LOC_Os01g61420
Os.47928.1.S2_at--486--10291Chr01:35841389..35841413 (25 bp)
TTTCCAGATTTGTATGCCTGTCTCT
LOC_Os01g61420
Os.47928.1.S2_at--775--10131Chr01:35841377..35841401 (25 bp)
TATGCCTGTCTCTAGCCGAGAGTAA
LOC_Os01g61420
Os.47928.1.S2_at--306--10591Chr01:35841343..35841367 (25 bp)
TTCTGCATCTATGACTGGCATGGAT
LOC_Os01g61420
Os.47928.1.S2_at--556--5971Chr01:35841249..35841273 (25 bp)
GAGACAACTCTGTGTTTTTGGGTTT
LOC_Os01g61420
Os.47928.1.S2_at--961--10831Chr01:35841232..35841256 (25 bp)
TTGGGTTTTCAGTACATCTATCCTA
LOC_Os01g61420
Os.47928.1.S2_at--591--2091Chr01:35841219..35841243 (25 bp)
ACATCTATCCTACATATCTTCCAAA
LOC_Os01g61420
Os.47928.1.S2_at--620--10411Chr01:35841162..35841186 (25 bp)
TTTTGGCTTGCAGAATTACCTCAAT
LOC_Os01g61420
Os.47928.1.S2_at--765--9071Chr01:35841085..35841109 (25 bp)
TGCTATTTTTCTGCAGAACTGCCCC
LOC_Os01g61420
Os.47928.1.S2_at--429--1271Chr01:35841013..35841037 (25 bp)
AGATCACTGTGTATACTGTTCAAAG
LOC_Os01g61420
Target Sequence 
TGTCTTTGGTCACTTCTATTTTATGACCATGTAACATTTATTTCATGTGGAACTTGGCAGAAGAGAATTTGAAGAGATTT
CTTCTGATTGATTTCCATTTCGGACAAAATACAAAGCTCCCAGACCAGCTGTCACAAAGAGGTCTGGTTGATTTTCCAGA
TTTGTATGCCTGTCTCTAGCCGAGAGTAACAGGTATTTTTCTGCATCTATGACTGGCATGGATAGTAGATTGGCATATGG
AAACAAACTCGGAAGGGTTTGGGTGGTGCTTAGGTGCTCTTGGCAGGGAAGGGAGACAACTCTGTGTTTTTGGGTTTTCA
GTACATCTATCCTACATATCTTCCAAAAGCTCACACATAAGCCAGTTAATTGTTTTTTTTTTTGGCTTGCAGAATTACCT
CAATAACTTCCATGTAAATATTTTACTCTTTTGCAGTATTACATGAACAGATTCAATGCTATTTTTCTGCAGAACTGCCC
CAAGATGTAAAATGAAAATGCATTGAGTCTGTTCAATTAGAAAACACAAGATCACTGTGTATACTGTTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47928.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis