Browse Element(s) Details


OsAffx.2379.1.S1_at

Description tigr:9629.m06050
TID=OsAffx.2379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g614509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein
LOC_Os01g61470OsAffx.23883.1.S1_x_at11/111+35874750..35875319Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2379.1.S1_at--33--3411Chr01:35857644..35857668 (25 bp)
CAGCAGCCAAGGAGTGCAACGCTGT
LOC_Os01g61450
OsAffx.2379.1.S1_at--148--4391Chr01:35857650..35857674 (25 bp)
CCAAGGAGTGCAACGCTGTGGCGAT
LOC_Os01g61450
OsAffx.2379.1.S1_at--631--6311NONE
GATGACATGGATAGATCGACTCCCA
NONE
OsAffx.2379.1.S1_at--101--5672Chr01:35859157..35859206 (25 bp)
GACATGGATAGATCGACTCCCAGAA
LOC_Os01g61450
OsAffx.2379.1.S1_at--500--831NONE
ATGGATAGATCGACTCCCAGAAGTC
NONE
OsAffx.2379.1.S1_at--242--10053Chr09:8832409..8832428 (20 bp)
TAGATCGACTCCCAGAAGTCGGCGG
NONE
OsAffx.2379.1.S1_at--458--6392Chr01:35859192..35859216 (25 bp)
GATCGACTCCCAGAAGTCGGCGGCG
LOC_Os01g61450
OsAffx.2379.1.S1_at--1090--7871Chr01:35859262..35859286 (25 bp)
GGTTGGTGACGGTTGGTTGCAGTGA
LOC_Os01g61450
OsAffx.2379.1.S1_at--914--8991Chr01:35859296..35859320 (25 bp)
TGAAGTCCGGCGAGATTGGCTACGC
LOC_Os01g61450
OsAffx.2379.1.S1_at--799--2851Chr01:35859298..35859322 (25 bp)
AAGTCCGGCGAGATTGGCTACGCCG
LOC_Os01g61450
OsAffx.2379.1.S1_at--963--7634Chr09:8832556..8832577 (22 bp)
GGGATCGGGAAGAGACAGATTATCA
NONE
Target Sequence 
CAGCAGCCAAGGAGTGCAACGCTGTGGCGATGGGGAGGAAGAAGGGAAGGAGAGGGAGGATGACATGGATAGATCGACTC
CCAGAAGTCGGCGGCGGCCGGACCTGGACCGGCTACAAGAAGGGCAAGTTGGGAATGGGCAGGTTGGTGACGGTTGGTTG
CAGTGAGGGAGGAAGTGAAGTCCGGCGAGATTGGCTACGCCGCCGCCAGGGACGACGGAAGGGGATCGGGAAGAGACAGA
TTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis