Browse Element(s) Details


Os.32153.2.S1_x_at

Description gb:NM_190440.1
DB_XREF= gi:34907963
GEN=B1088C09.30
TID=Os.32153.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.30 (B1088C09.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1088C09.30 (B1088C09.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g614406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein
LOC_Os01g61470OsAffx.23883.1.S1_x_at11/111+35874750..35875319Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32153.2.S1_x_at--540--6211Chr01:35852780..35852804 (25 bp)
GAGGCTGACCGCTTGTCAGTCACCG
LOC_Os01g61440
Os.32153.2.S1_x_at--854--8711Chr01:35852767..35852791 (25 bp)
TGTCAGTCACCGTGCTGATCACTCT
LOC_Os01g61440
Os.32153.2.S1_x_at--490--8531Chr01:35852737..35852761 (25 bp)
TGGACAGTGTCATCTCGCCATTGGT
LOC_Os01g61440
Os.32153.2.S1_x_at--773--8031Chr01:35852641..35852665 (25 bp)
GGAGATTTCACTCGTTTTTACTCGA
LOC_Os01g61440
Os.32153.2.S1_x_at--925--10371Chr01:35852626..35852650 (25 bp)
TTTTACTCGAGGACCTTGCGTGGAG
LOC_Os01g61440
Os.32153.2.S1_x_at--625--2951Chr01:35852594..35852618 (25 bp)
AATGGGCGGCTTCAGTTCAAGGACC
LOC_Os01g61440
Os.32153.2.S1_x_at--341--4031Chr01:35851273..35851297 (25 bp)
CGTTTCTGACCCTGCGCGCGCGTGG
NONE
Os.32153.2.S1_x_at--594--4695Chr02:31856893..31856917 (25 bp)
GCGGCACGGATGGATTCATGGATCT
NONE
Os.32153.2.S1_x_at--1087--111Chr01:35851219..35851243 (25 bp)
ATTCATGGATCTAATCCTGCGCCAG
NONE
Os.32153.2.S1_x_at--157--8571NONE
TGGATCTAATCCTGCGCCAGCACAT
NONE
Os.32153.2.S1_x_at--723--9672Chr12:4988331..4988473 (24 bp)
TCACCCCGCCGCTGGAGAGAGGAAA
NONE
Target Sequence 
GAGGCTGACCGCTTGTCAGTCACCGTGCTGATCACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGA
TGCCGGAGAAGAGGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGATGGGGATGGGTGGAGATTTCACTCGTTTTTAC
TCGAGGACCTTGCGTGGAGGGTGTATAATGGGCGGCTTCAGTTCAAGGACCCGCTGGTCCGCGGCCTCCAGGCGCCACGG
CTCACGGGGTCATGGGGAGGTCCAGCGGTGGCGGCTGGCGACGCGACAGCCGGCGGCGGCAACGAGCTCCACCTCTCGTG
CAGCCGTGCAGCCGCGCGCGTTTCTGACCCTGCGCGCGCGTGGCTGTCTGATGGCGTAGGCGGCACGGATGGATTCATGG
ATCTAATCCTGCGCCAGCACATCACCTACTCACCTCTCGGCTGCACGGCTGCGCCGAGAGGTGGAGCTCGCCGCCGCCGG
CGGCTGTCACGTCGCCGGCCGCCACCGCCGGACCTCCCCGTCACCCCGCCGCTGGAGAGAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32153.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis