Browse Element(s) Details


Os.25236.1.S1_x_at

Description gb:AK069755.1
DB_XREF= gi:32979779
TID=Os.25236.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADH dehydrogenase (B1088C09.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030K24, full insert sequence.
FL= gb:AK069755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6141010/11Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0015036molecular_functiondisulfide oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25236.1.S1_x_at--684--4311Chr01:35838142..35838166 (25 bp)
CCTTATGGTTTGCTGGTATGGTCTA
LOC_Os01g61410
Os.25236.1.S1_x_at--200--1251Chr01:35838171..35838195 (25 bp)
AGTTGGTCCTTCATCATTCGTTAAG
LOC_Os01g61410
Os.25236.1.S1_x_at--617--91Chr01:35838186..35838210 (25 bp)
ATTCGTTAAGTCGTTGCCATTTCCA
LOC_Os01g61410
Os.25236.1.S1_x_at--1111--10671Chr01:35838199..35838223 (25 bp)
TTGCCATTTCCAAAGTCACCAGGTG
LOC_Os01g61410
Os.25236.1.S1_x_at--209--711Chr01:35838515..35838539 (25 bp)
ATGAGTGGTTACGTGTTCCTTCTGC
LOC_Os01g61410
Os.25236.1.S1_x_at--926--931Chr01:35838588..35838612 (25 bp)
AGGCAAGGATGTTCTCCCAGCTTTA
LOC_Os01g61410
Os.25236.1.S1_x_at--363--4171NONE
CCCAGCTTTAGCTCAGGTTGCAGAA
NONE
Os.25236.1.S1_x_at--540--2931Chr01:35839388..35839412 (25 bp)
AAGGCAAGTATCTAGCTCACCTGCT
LOC_Os01g61410
Os.25236.1.S1_x_at--110--3751Chr01:35839403..35839427 (25 bp)
CTCACCTGCTTAACCATGTCATGAA
LOC_Os01g61410
Os.25236.1.S1_x_at--355--531Chr01:35839456..35839480 (25 bp)
ATCGACGTTGATCTAGGTCCTGCCT
LOC_Os01g61410
Os.25236.1.S1_x_at--123--3211Chr01:35839551..35839575 (25 bp)
CAAGGCTGGTTACTGTTTCTGTCTG
LOC_Os01g61410
Target Sequence 
CCTTATGGTTTGCTGGTATGGTCTACTGGAGTTGGTCCTTCATCATTCGTTAAGTCGTTGCCATTTCCAAAGTCACCAGG
TGGAAGGATTGGGGTTGATGAGTGGTTACGTGTTCCTTCTGCCCGGGATGTGTTCGCTATTGGGGATTGCAGTGGATTTC
TTGAAAGCACAGGCAAGGATGTTCTCCCAGCTTTAGCTCAGGTTGCAGAACGACAAGGCAAGTATCTAGCTCACCTGCTT
AACCATGTCATGAAAGCTGGAGGAGGGCATGCGAACTGTGAGATCGACGTTGATCTAGGTCCTGCCTTTGTGTATAAGCA
TCTGGGGAGCATGGCAACTGTCGGAAGATACAAAGCTCTAGTCGATCTGAGGCAAAGCAAGGCTGGTTACTGTTTCTGTC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25236.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis