Browse Element(s) Details


Os.37229.1.S1_at

Description gb:AK059947.1
DB_XREF= gi:32969965
TID=Os.37229.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H10, full insert sequence.
FL= gb:AK059947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4621011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46159NANA2+28123823..28124520NA
LOC_Os02g46170OsAffx.25885.1.S1_at1/112+28127354..28128414hypothetical protein
LOC_Os02g46180Os.53154.1.S1_at11/112+28130478..28131590expressed protein
LOC_Os02g46190OsAffx.2977.1.S1_at11/112+28138319..28138792senescence-associated protein, putative
LOC_Os02g46200OsAffx.8908.1.S1_at7/112+28141085..28145322transposon protein, putative, Mutator sub-class
LOC_Os02g46200OsAffx.8908.1.S1_x_at5/112+28141085..28145322transposon protein, putative, Mutator sub-class
LOC_Os02g46210Os.37229.1.S1_at11/112+28147420..28148541expressed protein
LOC_Os02g46220NANA2+28154520..28156184expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37229.1.S1_at--680--5151Chr02:28147851..28147875 (25 bp)
GCAAGCTCCGAGTTAATTCCAGTTT
LOC_Os02g46210
Os.37229.1.S1_at--70--10291Chr02:28147737..28147761 (25 bp)
TTTCCCCTTTTTCTTGTGTGAGGAT
LOC_Os02g46210
Os.37229.1.S1_at--764--10671Chr02:28147705..28147729 (25 bp)
TTCCTTTTCGACCTGTGGGAGAGAA
LOC_Os02g46210
Os.37229.1.S1_at--1010--8851Chr02:28147677..28147701 (25 bp)
TGATGCTGTGTCGTTGCAACCAGTT
LOC_Os02g46210
Os.37229.1.S1_at--361--1231Chr02:28147656..28147680 (25 bp)
AGTTCTTTCATCCTTGAGAGCCGTA
LOC_Os02g46210
Os.37229.1.S1_at--1076--7451Chr02:28147613..28147637 (25 bp)
GTGTGCCTCGATTCTGTACTATTAA
LOC_Os02g46210
Os.37229.1.S1_at--1073--9871Chr02:28147597..28147621 (25 bp)
TACTATTAACTTGTCACCTGAGCAG
LOC_Os02g46210
Os.37229.1.S1_at--224--8691Chr02:28147543..28147567 (25 bp)
TGTGCAATGATCTTGGCCATCCTGA
LOC_Os02g46210
Os.37229.1.S1_at--15--2511Chr02:28147513..28147537 (25 bp)
AACATGATGTTGGTCCGTTGGCCTT
LOC_Os02g46210
Os.37229.1.S1_at--1012--8451Chr02:28147495..28147519 (25 bp)
TGGCCTTGGCCCCAAATGCAGAAAT
LOC_Os02g46210
Os.37229.1.S1_at--47--9191Chr02:28147438..28147462 (25 bp)
TGCCGGCTTCCTAACGAACGAACAA
LOC_Os02g46210
Target Sequence 
GCAAGCTCCGAGTTAATTCCAGTTTTCTGTCCATCACCCTTGCAGTCTTGTTCTGTGCATGTATTAGAGCAAGAGAAATA
GCGCGGTAGAGAAAATACGTGTATATGACGGCGTTTTCCCCTTTTTCTTGTGTGAGGATTTTTCCCTTCCTTTTCGACCT
GTGGGAGAGAACTTTGATGCTGTGTCGTTGCAACCAGTTCTTTCATCCTTGAGAGCCGTAGATCCTACTGGGTAAAATGT
GTGCCTCGATTCTGTACTATTAACTTGTCACCTGAGCAGATCAACCGGTAAGGCATTGTAGCTGCTTTTGTGCAATGATC
TTGGCCATCCTGACCGGCAACATGATGTTGGTCCGTTGGCCTTGGCCCCAAATGCAGAAATGTAAAGAAAATGAACAGTT
GAGGCGGGGCCGCTGCCGGCTTCCTAACGAACGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis