Browse Element(s) Details


OsAffx.25885.1.S1_at

Description tigr:9632.m00517
TID=OsAffx.25885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0605011/11hypothetical protein
LOC_Os02g461701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06010OsAffx.15695.1.S1_x_at4/114+3102763..3106095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06020NANA4+3109147..3110050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06030NANA4+3112896..3116192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06050OsAffx.25885.1.S1_at11/114+3126581..3128461hypothetical protein
LOC_Os04g06050Os.26930.1.S2_x_at1/114+3126581..3128461hypothetical protein
LOC_Os04g06059OsAffx.15464.1.S1_at3/114+3134792..3135505NA
LOC_Os04g06059OsAffx.15464.1.S1_x_at3/114+3134792..3135505NA
LOC_Os04g06070NANA4+3138073..3144763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06080OsAffx.22947.1.S1_x_at1/114+3145048..3149481retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06090NANA4+3152352..3154027receptor protein kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25885.1.S1_at--481--3211Chr04:3127112..3127136 (25 bp)
CAAGGAGAAGTTGTTCGGCTGTATT
LOC_Os04g06050
OsAffx.25885.1.S1_at--345--231Chr04:3127082..3127106 (25 bp)
ATATATGTGTTCAGCGTACCCAGTT
LOC_Os04g06050
OsAffx.25885.1.S1_at--382--3391Chr04:3127071..3127095 (25 bp)
CAGCGTACCCAGTTGAGCAGGAGAA
LOC_Os04g06050
OsAffx.25885.1.S1_at--1009--51Chr04:3127025..3127049 (25 bp)
ATTGAAGGCAGATCCCATCGATGAG
LOC_Os04g06050
OsAffx.25885.1.S1_at--147--1231Chr04:3126965..3126989 (25 bp)
AGTTCTGGAGTTCATCCCTGAATTT
LOC_Os04g06050
OsAffx.25885.1.S1_at--19--4031Chr04:3126902..3126926 (25 bp)
CGTCTTCTTGCACTCTGAAGCTGAA
LOC_Os04g06050
OsAffx.25885.1.S1_at--81--331Chr04:3126873..3126897 (25 bp)
ATACAGCATCATCCGAGACCAAGCA
LOC_Os04g06050
OsAffx.25885.1.S1_at--156--1691Chr04:3126760..3126784 (25 bp)
AGCCTGTACGATACAACCCTGGCAG
LOC_Os04g06050
OsAffx.25885.1.S1_at--440--3252Chr02:28128285..28128305 (21 bp)
CAACCCTGGCAGCTCTGGAAAAATT
LOC_Os02g46170
OsAffx.25885.1.S1_at--59--5531Chr04:3126713..3126737 (25 bp)
GAAAAGATCTCTCAGCTGTAGCTCT
LOC_Os04g06050
OsAffx.25885.1.S1_at--796--7451Chr04:3126674..3126698 (25 bp)
GTGTCTTACTGATATCATGTTCATG
LOC_Os04g06050
Target Sequence 
CAAGGAGAAGTTGTTCGGCTGTATTTGGAAATATATGTGTTCAGCGTACCCAGTTGAGCAGGAGAAACTGAAGAAGGAGG
CGACGAAATTGAAGGCAGATCCCATCGATGAGGGCAGTCGTGTTAAGGGGCTTCGGGATATAGAAGAAGTTCTGGAGTTC
ATCCCTGAATTTCAAGAGTCCATTCTTATCTTGCACATCGCCACGGACGTCGTCTTCTTGCACTCTGAAGCTGAACAACA
TACAGCATCATCCGAGACCAAGCAGGATATGAAGGTGATCAAGATATTGTCGGATTACATGATGTTCCTCGTCGCGGTGC
TCCCCGGCATGCTACCAGGCCTCAAGCTACGCAGCCTGTACGATACAACCCTGGCAGCTCTGGAAAAATTATGGAGCGAG
AAAAGATCTCTCAGCTGTAGCTCTATGACAAGAGAGAAGTGTCTTACTGATATCATGTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis