Browse Element(s) Details


Os.53154.1.S1_at

Description gb:AK071055.1
DB_XREF= gi:32981078
TID=Os.53154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077C02, full insert sequence.
FL= gb:AK071055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4618011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g46140Os.47398.2.A1_at11/112+28116496..28118283expressed protein
LOC_Os02g46150Os.47398.1.S1_at11/112+28117822..28122244Uncharacterised protein family containing protein, expressed
LOC_Os02g46159NANA2+28123823..28124520NA
LOC_Os02g46170OsAffx.25885.1.S1_at1/112+28127354..28128414hypothetical protein
LOC_Os02g46180Os.53154.1.S1_at11/112+28130478..28131590expressed protein
LOC_Os02g46190OsAffx.2977.1.S1_at11/112+28138319..28138792senescence-associated protein, putative
LOC_Os02g46200OsAffx.8908.1.S1_at7/112+28141085..28145322transposon protein, putative, Mutator sub-class
LOC_Os02g46200OsAffx.8908.1.S1_x_at5/112+28141085..28145322transposon protein, putative, Mutator sub-class
LOC_Os02g46210Os.37229.1.S1_at11/112+28147420..28148541expressed protein
LOC_Os02g46220NANA2+28154520..28156184expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53154.1.S1_at--497--8531Chr02:28131001..28131025 (25 bp)
TGGACAGGAACAGGCACCGCAGGAA
LOC_Os02g46180
Os.53154.1.S1_at--366--3851Chr02:28130903..28130927 (25 bp)
CTGCAGCCGCAGAGGTAGAGATCAA
LOC_Os02g46180
Os.53154.1.S1_at--996--4531Chr02:28130843..28130867 (25 bp)
GCCCTTTGCCGGATTGGAGACTCAC
LOC_Os02g46180
Os.53154.1.S1_at--354--31Chr02:28130831..28130855 (25 bp)
ATTGGAGACTCACGCGCGCATGCAT
LOC_Os02g46180
Os.53154.1.S1_at--984--731Chr02:28130808..28130832 (25 bp)
ATGTTACGCATGCATGCACACACGC
LOC_Os02g46180
Os.53154.1.S1_at--422--2131Chr02:28130752..28130776 (25 bp)
ACAGGTGTGTACTAGACATTTCGAA
LOC_Os02g46180
Os.53154.1.S1_at--928--8571Chr02:28130587..28130611 (25 bp)
TGGTTAGAACAGCATGCTCGTCCAG
LOC_Os02g46180
Os.53154.1.S1_at--420--9091Chr02:28130556..28130580 (25 bp)
TGCTCTCGTGTTTGGTCTATTTACT
LOC_Os02g46180
Os.53154.1.S1_at--615--7791Chr02:28130543..28130567 (25 bp)
GGTCTATTTACTTCGTACTGGTTCA
LOC_Os02g46180
Os.53154.1.S1_at--37--9931Chr02:28130528..28130552 (25 bp)
TACTGGTTCAGACCGGGCTGTCAAA
LOC_Os02g46180
Os.53154.1.S1_at--893--5411Chr02:28130502..28130526 (25 bp)
GAAGCCTATGAGCTCTTTTCTAATG
LOC_Os02g46180
Target Sequence 
TGGACAGGAACAGGCACCGCAGGAAGAAGCAGCAGTACTCTCCCACGGCGCAGGCGGCGGCGCACCACCACCGATCAGAG
CGCGCGCCCCAGCGTCAGCTGCAGCCGCAGAGGTAGAGATCAAGAGAGAGCTCAGCTCGGCACCACACCAAGCCGCGCGC
CCTTTGCCGGATTGGAGACTCACGCGCGCATGCATGTTACGCATGCATGCACACACGCGTTCAACTGGGGTGATACTACA
TATACAAGTACAGGTGTGTACTAGACATTTCGAAGAGTCCATGGATCGATCGAGAGGAACCACCACCACGACCCCGAGTT
CCCACGTTTGTGGTAGGGAAAACGGTGAAGTAATTATAGAAGAGTTTTTTTTGTGCATTATGCTTGCTGATGAGCATATA
TATATATACAGGTTTGGTTAGAACAGCATGCTCGTCCAGGCGTCCTGCTCTCGTGTTTGGTCTATTTACTTCGTACTGGT
TCAGACCGGGCTGTCAAAAGAAGCCTATGAGCTCTTTTCTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis