Browse Element(s) Details


Os.37243.1.S1_at

Description gb:AK059855.1
DB_XREF= gi:32969873
TID=Os.37243.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131B07.10 (B1131B07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H11, full insert sequence.
FL= gb:AK059855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5167011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37243.1.S1_at--528--2871Chr01:30035751..30035775 (25 bp)
AAGTGTCTGACATGGCTTGAGCCCT
LOC_Os01g51670
Os.37243.1.S1_at--1070--1091Chr01:30035867..30035891 (25 bp)
AGTGTGTGTCCCGATTGCACAACCG
LOC_Os01g51670
Os.37243.1.S1_at--623--7471Chr01:30035870..30035894 (25 bp)
GTGTGTCCCGATTGCACAACCGGAA
LOC_Os01g51670
Os.37243.1.S1_at--322--7671Chr01:30035900..30035924 (25 bp)
GGGATTGTGAAAAGATCGATTCCTC
LOC_Os01g51670
Os.37243.1.S1_at--156--5531Chr01:30035908..30035932 (25 bp)
GAAAAGATCGATTCCTCAGCTGTGA
LOC_Os01g51670
Os.37243.1.S1_at--834--6391Chr01:30035913..30035937 (25 bp)
GATCGATTCCTCAGCTGTGATTGCA
LOC_Os01g51670
Os.37243.1.S1_at--524--91Chr01:30035918..30035942 (25 bp)
ATTCCTCAGCTGTGATTGCAAGTGC
LOC_Os01g51670
Os.37243.1.S1_at--2--3371Chr01:30035948..30035972 (25 bp)
CACCCTGCGCAGCTGTATGGTTTTG
LOC_Os01g51670
Os.37243.1.S1_at--1045--3431Chr01:30036111..30036135 (25 bp)
CAGTACAACCTGTAACTTTCCAGTT
LOC_Os01g51670
Os.37243.1.S1_at--496--9791Chr01:30036123..30036147 (25 bp)
TAACTTTCCAGTTTCGGCCACAAAT
LOC_Os01g51670
Os.37243.1.S1_at--614--7071Chr01:30036129..30036153 (25 bp)
TCCAGTTTCGGCCACAAATTGTTCC
LOC_Os01g51670
Target Sequence 
AAGTGTCTGACATGGCTTGAGCCCTGGGGNCCTGGCTGTGCAACCCCTGNNGAAACGTCAGTGCTCCACTGCTNGGANCC
GAGACGGAGACGCCGGCAACATNATAATTNCCNANNCAGTGTGTGTCCCGATTGCACAACCGGAANNAAAGGGATTGTGA
AAAGATCGATTCCTCAGCTGTGATTGCAAGTGCTCCTCCACCCTGCGCAGCTGTATGGTTTTGACCGAGTTTCAGGACCA
AAAACGGTTCCTCCACCNTGTGNTGATTCACCGGTAGTTCCTGTTGATNCAGTATCTTCCAAAGCCTCTGGTTTTCAGAA
TGATCAAAGGAACCACAGAAGATACACTAGGGCTCGGATTNCAGTACAACCTGTAACTTTCCAGTTTCGGCCACAAATTG
TTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis