Browse Element(s) Details


Os.37243.2.S1_x_at

Description gb:NM_191740.1
DB_XREF= gi:34910563
GEN=B1131B07.10
TID=Os.37243.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131B07.10 (B1131B07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1131B07.10 (B1131B07.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g516709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37243.2.S1_x_at--910--2331Chr01:30035366..30035390 (25 bp)
AAAGACAGCTCGTCGTGTACATCGG
LOC_Os01g51670
Os.37243.2.S1_x_at--475--1291Chr01:30035552..30035576 (25 bp)
AGATCCCATGTCAAAGCCGGTGTTT
LOC_Os01g51670
Os.37243.2.S1_x_at--297--10291Chr01:30035583..30035607 (25 bp)
TTTCCACGGTGCTCACAATCTTGTT
LOC_Os01g51670
Os.37243.2.S1_x_at--222--9871Chr01:30035612..30035636 (25 bp)
TACAGAGTAGCTGCGCTTATGCCTT
LOC_Os01g51670
Os.37243.2.S1_x_at--818--771Chr01:30035663..30035687 (25 bp)
ATGTCCGTCTTCACAATTCTTGCAG
LOC_Os01g51670
Os.37243.2.S1_x_at--372--3631Chr01:30035681..30035705 (25 bp)
CTTGCAGGATTCTACATGTTCTTCG
LOC_Os01g51670
Os.37243.2.S1_x_at--970--10551Chr01:30035699..30035719 (21 bp)
TTCTTCGTTTGCAGCGACGAGCTGT
LOC_Os01g51670
Os.37243.2.S1_x_at--221--6571Chr01:30036014..30036038 (25 bp)
GATTCACCGGTAGTTCCTGTTGATA
LOC_Os01g51670
Os.37243.2.S1_x_at--788--9471Chr01:30036044..30036068 (25 bp)
TCTTCCAAAGCCTCTGGTTTTCAGA
LOC_Os01g51670
Os.37243.2.S1_x_at--677--8291NONE
GGCTCGGATTACAAAGTCCCGCCAA
NONE
Os.37243.2.S1_x_at--644--8291Chr01:30036686..30036710 (25 bp)
GGCTTTGCCACCGTATTACTCTACG
NONE
Target Sequence 
AAAGACAGCTCGTCGTGTACATCGGCCTTCGCCTTCACCATCCTTGCCATCAACTGCGGCGCAGCTATCTACCATTCGCG
GCGTGACCCCTGGTCAGTCGCGTTTGTGTTGGCCGCCTTCCTCATGCTCATCTCGCTCTTCTGCGCGCTCCGCTTGTTCG
AGAGCTTGCCTCGCAGCTCCCCCCGCAGATCCCATGTCAAAGCCGGTGTTTGGGTCCTTTCCACGGTGCTCACAATCTTG
TTCACCTACAGAGTAGCTGCGCTTATGCCTTTCCCAGTCGCCGTTGTCGTGTGGGCTATGTCCGTCTTCACAATTCTTGC
AGGATTCTACATGTTCTTCGTTTGCAGCGACGAGCTGTATGGTTTTGACCGAGTTTCAGGACCAAAAACGGTTCCTCCAC
CCTGTGCTGATTCACCGGTAGTTCCTGTTGATACAGTATCTTCCAAAGCCTCTGGTTTTCAGAATGATCAAAGGAACCAC
AGAAGATACACTAGGGCTCGGATTACAAAGTCCCGCCAAACCGTCAGCGGCTTTGCCACCGTATTACTCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37243.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis