Browse Element(s) Details


Os.37330.1.S1_at

Description gb:AK059229.1
DB_XREF= gi:32969247
TID=Os.37330.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) auxin transport protein-like (P0003D09.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E02, full insert sequence.
FL= gb:AK059229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5886011/11Auxin Efflux Carrier family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58810NANA1+34306996..34310583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.3.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820OsAffx.8469.1.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.45173.3.S1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58820Os.47999.2.A1_x_at1/111+34311867..34315604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g58830OsAffx.31753.4.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.1.S1_s_at11/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58830OsAffx.31753.4.S1_at1/111+34319117..34321036hAT family dimerisation domain containing protein
LOC_Os01g58850OsAffx.2361.1.S1_x_at11/111+34323948..34324853circadian clock coupling factor ZGT, putative
LOC_Os01g58860Os.37330.1.S1_at11/111+34330540..34333308Auxin Efflux Carrier family protein, expressed
LOC_Os01g58870NANA1+34344413..34346076phosphate translocator, putative, expressed
LOC_Os01g58880OsAffx.11653.1.S1_at1/111+34349002..34349313hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0005886cellular_componentplasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016328cellular_componentlateral plasma membrane
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37330.1.S1_at--692--9851Chr01:34331782..34331806 (25 bp)
TACAAGATAGCGTCGTTCTCCATGG
LOC_Os01g58860
Os.37330.1.S1_at--82--6731Chr01:34331768..34331792 (25 bp)
GTTCTCCATGGTCATCAAGTTTCTG
LOC_Os01g58860
Os.37330.1.S1_at--505--9731Chr01:34331754..34331778 (25 bp)
TCAAGTTTCTGATAGGCCCGGTTGT
LOC_Os01g58860
Os.37330.1.S1_at--921--10071Chr01:34331742..34331766 (25 bp)
TAGGCCCGGTTGTGATGCTGTTCGC
LOC_Os01g58860
Os.37330.1.S1_at--1095--5111Chr01:34331694..34331718 (25 bp)
GCACACTTCTGCACATCGCTGTTGT
LOC_Os01g58860
Os.37330.1.S1_at--306--7371Chr01:34331054..34331078 (25 bp)
GTGACATCATTTGTGTACGCTGAAG
LOC_Os01g58860
Os.37330.1.S1_at--390--4051Chr01:34331037..34331061 (25 bp)
CGCTGAAGAGTACAAGGTCCACGCA
LOC_Os01g58860
Os.37330.1.S1_at--761--7271Chr01:34331021..34331045 (25 bp)
GTCCACGCAGACATCATGAGCACAG
LOC_Os01g58860
Os.37330.1.S1_at--83--9691Chr01:34330862..34330886 (25 bp)
TCACTTCCTGTGACAATTGTTTACT
LOC_Os01g58860
Os.37330.1.S1_at--256--1051Chr01:34330700..34330724 (25 bp)
AGGTGAATTGATTTCCCTCCGGAGC
LOC_Os01g58860
Os.37330.1.S1_at--330--10211Chr01:34330542..34330566 (25 bp)
TATTACAGCCCACCAGTTGATTCTT
LOC_Os01g58860
Target Sequence 
TACAAGATAGCGTCGTTCTCCATGGTCATCAAGTTTCTGATAGGCCCGGTTGTGATGCTGTTCGCCTCGCTCGTCATCGG
CATGCACGGCACACTTCTGCACATCGCTGTTGTGCAGGCGGCTCTCCCCCTGGCAGTGACATCATTTGTGTACGCTGAAG
AGTACAAGGTCCACGCAGACATCATGAGCACAGGGNTTNTTNNTNNNATATTTATATCACTTCCTGTGACAATTGTTTAC
TATATTCTGTTGGGGCTGTGAGCCTGTGATTGAGACATCTAAATTTAGTCGAAGGCTAATTAAAGTTGCATGTGTGCTGA
TGTGCATATATGTAGGAAGACAGAATACAAACAGTAAAAATACTGAAGGATGACAACAAGGTGAATTGATTTCCCTCCGG
AGCCTGAAGATTGGGGTTCTGGCGAGAGATACAGTGAGATGTGACTGTAATGTTTGGTAATAATAAGATGTCACAAAAAC
GCGGCATATATGCTGAAACTTTTGCAATGTACAGCAAGTATACAATGAACAGGGCTTATTACAGCCCACCAGTTGATTCT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis