Browse Element(s) Details


Os.37362.1.S1_at

Description gb:AK058997.1
DB_XREF= gi:32969015
TID=Os.37362.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G05, full insert sequence.
FL= gb:AK058997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4046011/11S1 RNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40440Os.55447.1.S1_at11/112+24510505..24512299GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g40450OsAffx.24661.1.S1_at11/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40450Os.54715.1.S1_x_at10/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40460Os.37362.1.S1_at11/112+24525423..24528954S1 RNA binding domain containing protein, expressed
LOC_Os02g40470NANA2+24535169..24536827retrotransposon, putative, centromere-specific
LOC_Os02g40480NANA2+24539576..24542719retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37362.1.S1_at--950--3151Chr02:24525665..24525689 (25 bp)
AATTCCGGTCTTCTCATTGCTAGAT
LOC_Os02g40460
Os.37362.1.S1_at--351--2991Chr02:24525618..24525642 (25 bp)
AATGTCTTCTCTATAGGCCTACAGA
LOC_Os02g40460
Os.37362.1.S1_at--126--10091Chr02:24525605..24525629 (25 bp)
TAGGCCTACAGAAATAGACGCTTGT
LOC_Os02g40460
Os.37362.1.S1_at--955--7431Chr02:24525576..24525600 (25 bp)
GTGTAGCAGCTAATTCATCGACTTG
LOC_Os02g40460
Os.37362.1.S1_at--3--5991Chr02:24525543..24525567 (25 bp)
GAGAAATAATACTGCGGCTCCCTCG
LOC_Os02g40460
Os.37362.1.S1_at--659--8311Chr02:24525528..24525552 (25 bp)
GGCTCCCTCGACTTTTGTCAGAGTG
LOC_Os02g40460
Os.37362.1.S1_at--48--9371Chr02:24525521..24525545 (25 bp)
TCGACTTTTGTCAGAGTGCTACCAA
LOC_Os02g40460
Os.37362.1.S1_at--1047--8711Chr02:24525485..24525509 (25 bp)
TGTCGTTAGTAGTTTTGCCCTGCAA
LOC_Os02g40460
Os.37362.1.S1_at--868--9011Chr02:24525465..24525489 (25 bp)
TGCAACTCACAAACGCCCAAACATT
LOC_Os02g40460
Os.37362.1.S1_at--1012--2591Chr02:24525454..24525478 (25 bp)
AACGCCCAAACATTACGCATCACTT
LOC_Os02g40460
Os.37362.1.S1_at--449--4971Chr02:24525438..24525462 (25 bp)
GCATCACTTGGTATCTGAATCTCTT
LOC_Os02g40460
Target Sequence 
AATTCCGGTCTTCTCATTGCTAGATTAGTAGCCATTTTGATGGGGCTAATGTCTTCTCTATAGGCCTACAGAAATAGACG
CTTGTAAATGTGTAGCAGCTAATTCATCGACTTGAGGAACATGAGAAATAATACTGCGGCTCCCTCGACTTTTGTCAGAG
TGCTACCAAANTNGTGTGGCTGTCGTTAGTAGTTTTGCCCTGCAACTCACAAACGCCCAAACATTACGCATCACTTGGTA
TCTGAATCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis