Browse Element(s) Details


Os.37413.1.S2_at

Description gb:CB643917
DB_XREF= gi:29638908
DB_XREF=OSJNEb04N24.r
CLONE=OSJNEb04N24
TID=Os.37413.1
CNT=5
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.37413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489B03.24 (P0489B03.24), mRNA
FL= gb:AK058707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64170Os.4636.1.S2_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64170Os.4636.1.S1_a_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64180Os.18461.1.S1_at11/111+37602604..37604249expressed protein
LOC_Os01g64190Os.37413.1.S2_at11/111+37605840..37607296expressed protein
LOC_Os01g64190Os.37413.1.S1_at11/111+37605840..37607296expressed protein
LOC_Os01g64200OsAffx.24056.2.S1_at11/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64200OsAffx.24056.1.S1_x_at6/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37413.1.S2_at--669--611Chr01:37606345..37606369 (25 bp)
ATGCGATTTCTTTCACATGGTCCGA
LOC_Os01g64190
Os.37413.1.S2_at--471--3111Chr01:37606260..37606284 (25 bp)
AATTTGTTTGCATCGGCCTTAAGCC
LOC_Os01g64190
Os.37413.1.S2_at--503--6291Chr01:37606224..37606248 (25 bp)
GATGATTTCTGGATGCCTGAACCTA
LOC_Os01g64190
Os.37413.1.S2_at--625--91Chr01:37606174..37606198 (25 bp)
ATTCGGTTATTTGATGCCGGCATCA
LOC_Os01g64190
Os.37413.1.S2_at--623--6871Chr01:37606141..37606165 (25 bp)
GTATTCATTGTTGTGCCTGAGAAAT
LOC_Os01g64190
Os.37413.1.S2_at--264--10411Chr01:37606117..37606141 (25 bp)
TTATCAAGCTTTGTACTTCCCTTTC
LOC_Os01g64190
Os.37413.1.S2_at--418--2511Chr01:37606088..37606112 (25 bp)
AACATAGCACGTTTAGCTTGCCCTG
LOC_Os01g64190
Os.37413.1.S2_at--66--6731Chr01:37606064..37606088 (25 bp)
GTTCTTTTTAGCTTATCCACTGGAT
LOC_Os01g64190
Os.37413.1.S2_at--28--9131Chr01:37606036..37606060 (25 bp)
TGCTGTGGGTTATTTGCTCCACGGC
LOC_Os01g64190
Os.37413.1.S2_at--182--4411Chr01:37606013..37606037 (25 bp)
GCCACACTTCTAAGCTATCTGTTCA
LOC_Os01g64190
Os.37413.1.S2_at--919--2591Chr01:37605907..37605931 (25 bp)
AACGCTAACCTTTGTGATTCGGTGA
LOC_Os01g64190
Target Sequence 
ATGCGATTTCTTTCACATGGTCCGATTGGATTTGGAGGGTAACAATATATGGTTCCCTGGATAAATCAACAGAATAAGCA
CACCCAATTTGTTTGCATCGGCCTTAAGCCCTTAACGTTGGGATGATTTCTGGATGCCTGAACCTAAAACTGTGAACTAG
AGAATAGTTTCATTCGGTTATTTGATGCCGGCATCAAAGTTTTGGTATTCATTGTTGTGCCTGAGAAATTATCAAGCTTT
GTACTTCCCTTTCCCTTAACATAGCACGTTTAGCTTGCCCTGTTCTTTTTAGCTTATCCACTGGATTATTGCTGTGGGTT
ATTTGCTCCACGGCCACACTTCTAAGCTATCTGTTCAGTTTATTTCATAAAATGTTTAATTTATCCCTGTAATCAAGTAG
ACAATCCGTGGGAGTAATCTGCTGAATAATTTGTTTCAAACGCTAACCTTTGTGATTCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37413.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis