Browse Element(s) Details


Os.37454.1.S1_at

Description gb:AK058473.1
DB_XREF= gi:32968491
TID=Os.37454.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative retinal pigment epithelium 65 protein (P0697C12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B12, full insert sequence.
FL= gb:AK058473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3858011/11decreased apical dominance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified
LOC_Os01g38560NANA1+21988532..21989050expressed protein
LOC_Os01g38570NANA1+21990045..21990706hypothetical protein
LOC_Os01g38580Os.37454.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580Os.40825.1.S1_at11/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38580OsAffx.9447.1.S1_x_at1/111+21992466..21996156decreased apical dominance protein, putative, expressed
LOC_Os01g38590OsAffx.23555.1.S1_at11/111+21998535..21998816hypothetical protein
LOC_Os01g38600NANA1+22002399..22003015hypothetical protein
LOC_Os01g38610Os.21231.1.S1_at11/111+22014286..22016549Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009733biological_processresponse to auxin stimulus
GO:0010223biological_processsecondary shoot formation
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37454.1.S1_at--740--8131Chr01:21993250..21993274 (25 bp)
GGAAGTACCAGTATGCCTACGCGTG
LOC_Os01g38580
Os.37454.1.S1_at--1158--10551Chr01:21993119..21993143 (25 bp)
TTCTTCGTCGCGAGGCCGGGAGCCA
LOC_Os01g38580
Os.37454.1.S1_at--371--8831Chr01:21992831..21992855 (25 bp)
TGATATCTATTGTAAGCTCCGACGA
LOC_Os01g38580
Os.37454.1.S1_at--509--9951Chr01:21992796..21992820 (25 bp)
TACGCACTGGTGCTAGACGCGACCA
LOC_Os01g38580
Os.37454.1.S1_at--711--1831Chr01:21992780..21992804 (25 bp)
ACGCGACCACGTTTGAGGAGATTGC
LOC_Os01g38580
Os.37454.1.S1_at--685--1251Chr01:21992762..21992786 (25 bp)
AGATTGCGCGCGTCAGGTTCCCCTA
LOC_Os01g38580
Os.37454.1.S1_at--550--9931Chr01:21992727..21992751 (25 bp)
TACGGCTTCCATGGCTGCTGGATCC
LOC_Os01g38580
Os.37454.1.S1_at--117--9131Chr01:21992712..21992736 (25 bp)
TGCTGGATCCCTGCGACGGAAGAGT
LOC_Os01g38580
Os.37454.1.S1_at--494--2611Chr01:21992673..21992697 (25 bp)
AACCCGTATGAATATCTGTAGCCGA
LOC_Os01g38580
Os.37454.1.S1_at--474--1671Chr01:21992654..21992678 (25 bp)
AGCCGAGAAGACTAGGATCATATGT
LOC_Os01g38580
Os.37454.1.S1_at--65--10351Chr01:21992487..21992511 (25 bp)
TTTATCGGCCCTAAGTGAACACCAA
LOC_Os01g38580
Target Sequence 
GGAAGTACCAGTATGCCTACGCGTGCGGCGCGCGTCGCCCGTGCAACTTCCCCAACACGCTCACCAAGATCGACCTGGTG
GAGAAGAAGGCCAAGAGCTGGCACGAGGAGGGCTCCGTGCCGTCCGAGCCTTTCTTCGTCGCGAGGCCGGGAGCCACCGA
CGAAGACGATGGAGTGGTGATATCTATTGTAAGCTCCGACGATGGCGAAGGGTACGCACTGGTGCTAGACGCGACCACGT
TTGAGGAGATTGCGCGCGTCAGGTTCCCCTACGGATTGCCCTACGGCTTCCATGGCTGCTGGATCCCTGCGACGGAAGAG
TGACTGAGAAGGAAAAACCCGTATGAATATCTGTAGCCGAGAAGACTAGGATCATATGTATGAGCATNCATGTAACTCGT
GGGGATTTTTATTTTAAGCACTACTGGAGAAACCATTTTTGTTGGGTTGGACAAAATCCACAATAATCCCAGTTTGAATA
TAAACCGGAACTAAAGATGATTTTTTATCCCGGGTTAAAACTTTATCGGCCCTAAGTGAACACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis