Browse Element(s) Details


Os.37531.1.S1_at

Description gb:AK107013.1
DB_XREF= gi:32992222
TID=Os.37531.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F10, full insert sequence.
FL= gb:AK107013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g333308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33320Os.53893.1.S1_at10/116+19400019..19405763extra-large G-protein, putative, expressed
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37531.1.S1_at--985--10751Chr06:19416864..19416888 (25 bp)
TTGAGCTCTCACTGCAAAGGCCTGA
LOC_Os06g33330
Os.37531.1.S1_at--521--1751Chr06:19416906..19416930 (25 bp)
ACCGGACGTATCATCCTTTCGAGAA
LOC_Os06g33330
Os.37531.1.S1_at--378--9171Chr06:19416975..19416999 (25 bp)
TGCCCGGTCCTATTGATGCGTGGAA
LOC_Os06g33330
Os.37531.1.S1_at--221--8231Chr06:19417021..19417045 (25 bp)
GGCAATAAACTGAAACCTCCTGAAT
LOC_Os06g33330
Os.37531.1.S1_at--367--4451NONE
GCCTTCTTTTTTGGCGCTCTTTGAA
NONE
Os.37531.1.S1_at--34--2831Chr06:19417161..19417185 (25 bp)
AAGTATCGGTCTCTTGTTGTAGCCT
LOC_Os06g33330
Os.37531.1.S1_at--54--6651Chr06:19417176..19417200 (25 bp)
GTTGTAGCCTGTCTGATTGCGGCAC
LOC_Os06g33330
Os.37531.1.S1_at--446--7231Chr06:19417221..19417245 (25 bp)
GTCCCCTGGCCGTAATTATCAGTTA
LOC_Os06g33330
Os.37531.1.S1_at--360--10171Chr06:19417297..19417321 (25 bp)
TATAAGTCTCATCAGCTACTCGTCT
LOC_Os06g33330
Os.37531.1.S1_at--295--3731Chr06:19417312..19417336 (25 bp)
CTACTCGTCTTCTGTTTTCAGCTAA
NONE
Os.37531.1.S1_at--352--2291Chr06:19417347..19417371 (25 bp)
AAATGATCAGTCCTTTTATACCTTG
NONE
Target Sequence 
TTGAGCTCTCACTGCAAAGGCCTGACGGCCACCCTGGGCCTTACCGGACGTATCATCCTTTCGAGAAGGCAACATCGGCC
AAAGTTCAGAACGACTGCCTGCACTGGTGCTTGCCCGGTCCTATTGATGCGTGGAACGATATAATCATGCAGATGTTGGC
AATAAACTGAAACCTCCTGAATCATCTAAATTTTGACAAAAAGTGTTGATTCAGACCTGATTATTATACATAGGTAAACT
TCTTAGCATAATCAAGTGCCTTCTTTTTTGGCGCTCTTTGAAGAATTTCCAGTAGGTAAGTATCGGTCTCTTGTTGTAGC
CTGTCTGATTGCGGCACCCATCTGCAGCCATAGGAANGTCCCCTGGCCGTAATTATCAGTTATGAACTTGGGTTGTGTTG
TACAACTTGAGATAGTGGATTTAAAGAGTCAAATATAAGTCTCATCAGCTACTCGTCTTCTGTTTTCAGCTAATTGAGCT
CTGAAATGATCAGTCCTTTTATACCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis