Browse Element(s) Details


Os.37576.1.S1_at

Description gb:AK119756.1
DB_XREF= gi:37989379
TID=Os.37576.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.37576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-H05, full insert sequence.
FL= gb:AK065258.1 gb:AK119756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6013011/11transcription elongation factor S-II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60090Os.7657.1.S1_at11/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60090OsAffx.17472.1.S1_at1/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37576.1.S1_at--1041--4731Chr03:34134650..34134674 (25 bp)
GCTGACAACAACACTGATTTCCGAA
LOC_Os03g60130
Os.37576.1.S1_at--314--5371Chr03:34134628..34134652 (25 bp)
GAAGAAGGGTTCTCCTTGGCCAAGT
LOC_Os03g60130
Os.37576.1.S1_at--200--6211Chr03:34134594..34134618 (25 bp)
GAGGCTTGTTGACATATCTCCAGAA
LOC_Os03g60130
Os.37576.1.S1_at--358--8531Chr03:34134498..34134522 (25 bp)
TGGAGGAGCCCCAAAGGCGACTACT
LOC_Os03g60130
Os.37576.1.S1_at--989--8651Chr03:34134452..34134476 (25 bp)
TGTGGCCAGCGGAAGACGACTTACT
LOC_Os03g60130
Os.37576.1.S1_at--763--5351Chr03:34134441..34134465 (25 bp)
GAAGACGACTTACTACCAGCTGCAG
LOC_Os03g60130
Os.37576.1.S1_at--642--1391Chr03:34134418..34134442 (25 bp)
AGACTCGGAGTGCTGATGAGCCAAT
LOC_Os03g60130
Os.37576.1.S1_at--727--1951Chr03:34134358..34134382 (25 bp)
ACTGGAAGTTCTGCTGAGCGCCAAT
LOC_Os03g60130
Os.37576.1.S1_at--97--9111Chr03:34134332..34134356 (25 bp)
TGCTGAAAATGTTCTCCCGGCTAGC
LOC_Os03g60130
Os.37576.1.S1_at--731--4191Chr03:34134317..34134341 (25 bp)
CCCGGCTAGCGGTGTCATTTGAATT
LOC_Os03g60130
Os.37576.1.S1_at--480--8271Chr03:34134287..34134311 (25 bp)
GGCAGGTTGGCTTCAATTTTCCATA
LOC_Os03g60130
Target Sequence 
GCTGACAACAACACTGATTTCCGAAGAAGGGTTCTCCTTGGCCAAGTGAGGCCTGAGAGGCTTGTTGACATATCTCCAGA
AGAGATGGCTAGTGACGCGAGGAAGCTTGAGAATAAGCAGATCAAGGAGAAGGCTTTGTTCGATTGTGAGCGTGGAGGAG
CCCCAAAGGCGACTACTGATCAGTTCAAGTGTGGCAGGTGTGGCCAGCGGAAGACGACTTACTACCAGCTGCAGACTCGG
AGTGCTGATGAGCCAATGACAACATTTGTGACATGCGTGAACTGCAACAACCACTGGAAGTTCTGCTGAGCGCCAATCTG
CTGAAAATGTTCTCCCGGCTAGCGGTGTCATTTGAATTTGACAGGCAGGTTGGCTTCAATTTTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis