Browse Element(s) Details


Os.37590.1.S1_at

Description gb:AK064179.1
DB_XREF= gi:32974197
TID=Os.37590.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B04, full insert sequence.
FL= gb:AK064179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0851010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein
LOC_Os06g08500OsAffx.27510.2.S1_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500OsAffx.27510.2.S1_x_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os06g08540OsAffx.15312.1.S1_at11/116+4223415..4226743formin homology 2 domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37590.1.S1_at--788--5871Chr06:4201756..4201780 (25 bp)
GAGCGGGCTATCTGGAGTCCAAGCT
LOC_Os06g08510
Os.37590.1.S1_at--897--3631Chr06:4201626..4201650 (25 bp)
CTTCCTGTCTGCTTGTCGGATTCAC
LOC_Os06g08510
Os.37590.1.S1_at--499--7931Chr06:4201609..4201633 (25 bp)
GGATTCACCGATTGTAGCCCGCAGG
LOC_Os06g08510
Os.37590.1.S1_at--713--9991NONE
TAGCCCGCAGGCATTTTCAGGATGG
NONE
Os.37590.1.S1_at--451--3591Chr06:4200647..4200671 (25 bp)
CATTTTCAGGATGGGCAGTGAGGAC
LOC_Os06g08510
Os.37590.1.S1_at--268--6352Chr01:8654458..8654482 (25 bp)
GATGCTGCTTGAGGTTTGGATAAAC
NONE
Os.37590.1.S1_at--629--1032Chr06:4200386..4200410 (25 bp)
AGGTGCATTCTTGTTTTATCTGGTG
LOC_Os06g08510
Os.37590.1.S1_at--1121--111Chr06:4200380..4200404 (25 bp)
ATTCTTGTTTTATCTGGTGGCAGGA
LOC_Os06g08510
Os.37590.1.S1_at--424--1891Chr06:4200340..4200364 (25 bp)
ACGTTCTTGGAACACTGCTATTTTC
LOC_Os06g08510
Os.37590.1.S1_at--421--8171Chr06:4200332..4200356 (25 bp)
GGAACACTGCTATTTTCTTGAAAGC
LOC_Os06g08510
Os.37590.1.S1_at--1119--2071Chr06:4200280..4200304 (25 bp)
ACATTACTCTTCTTTTGTCTTAGAT
LOC_Os06g08510
Target Sequence 
GAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCC
CTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATT
GTAGCCCGCAGGCATTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTG
GTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCAAAGAAAATTAGACAAGTTCCTGAATGC
TATTTTCTGCCTCGGCGATATTTGCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGAT
GCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGGAGGGGCCATTCAACTCA
CGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTGGATTATACAATTGAAAACATTACTCTTCTTTTGTCTT
AGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis