Browse Element(s) Details


Os.37629.1.S1_at

Description gb:AK060481.1
DB_XREF= gi:32970499
TID=Os.37629.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alanine aminotransferase (B1056G08.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G11, full insert sequence.
FL= gb:AK060481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4260011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42570OsAffx.28874.1.S1_x_at11/117+25467856..25468425Dirigent-like protein
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37629.1.S1_at--1131--9451Chr07:25491951..25492231 (25 bp)
TCTGGCTCGACGTGCAAAGGCTTTG
LOC_Os07g42600
Os.37629.1.S1_at--886--8411Chr07:25491885..25491909 (25 bp)
GGCCGAGGGTGCGATGTATCTCTTC
LOC_Os07g42600
Os.37629.1.S1_at--362--7011Chr07:25491811..25491835 (25 bp)
GTACTGCCCCAGATGCGTATTATGC
LOC_Os07g42600
Os.37629.1.S1_at--182--4531Chr07:25491784..25491808 (25 bp)
GCCGCCTTCTTGAAGCTACTGGAAT
LOC_Os07g42600
Os.37629.1.S1_at--271--10791Chr07:25491754..25491778 (25 bp)
TTGTTCCTGGTTCTGGATTTGGGCA
LOC_Os07g42600
Os.37629.1.S1_at--1072--7891Chr07:25491612..25491636 (25 bp)
GGTTCCTGGAACGTGGCATTTTAGA
LOC_Os07g42600
Os.37629.1.S1_at--846--9511Chr07:25491454..25491478 (25 bp)
TCTAAAACTTGGCTTTTCTGCCTTC
LOC_Os07g42600
Os.37629.1.S1_at--1045--91Chr07:25491381..25491405 (25 bp)
ATTCGCACCACCCTGGATTGGTCAG
LOC_Os07g42600
Os.37629.1.S1_at--58--6611Chr07:25491366..25491390 (25 bp)
GATTGGTCAGTGTAACTCCTCCTCA
LOC_Os07g42600
Os.37629.1.S1_at--568--3811Chr07:25491348..25491372 (25 bp)
CTCCTCAGCTCTTGTTAGGTCGAAT
LOC_Os07g42600
Os.37629.1.S1_at--92--5531Chr07:25491323..25491347 (25 bp)
GAAAACCTGCAAAATCCTGGAGAAT
LOC_Os07g42600
Target Sequence 
TCTGGCTCGACGTGCAAAGGCTTTGGAAGAAGCCTTCAACAGCTTAGAAGGCATAACATGCAACAAGGCCGAGGGTGCGA
TGTATCTCTTCCCTCGCATCTATTTGCCCCAGAAGGCAATTGGAGCTGCCCAAGCAGCTGGTACTGCCCCAGATGCGTAT
TATGCCCGCCGCCTTCTTGAAGCTACTGGAATTGTTGTTGTTCCTGGTTCTGGATTTGGGCAGGTTCCTGGAACGTGGCA
TTTTAGATGCACAATTTTGCCACAGGAGGACAAAATACCAGCGATCATATCCAAGTTCAAGGAGTTCCACGAGAAGTTCA
TGGATGAATTCCGGGATTAAGAATCTCGTAAACTGAAAAATTGCTGGCATTGGATGTANTTCTAAAACTTGGCTTTTCTG
CCTTCTGTCAAAGGCAATGCCATCAACTTCAAATCAAAATAATAAGNCCATCCATTCGCACCACCCTGGATTGGTCAGTG
TAACTCCTCCTCAGCTCTTGTTAGGTCGAATGAAAACCTGCAAAATCCTGGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis