Browse Element(s) Details


Os.37689.1.S1_at

Description gb:AK064511.1
DB_XREF= gi:32974529
TID=Os.37689.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E08, full insert sequence.
FL= gb:AK064511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3844011/11XH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38410OsAffx.32083.3.S1_x_at11/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_x_at9/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.1.S1_at6/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.2.S1_x_at2/1112+23542601..23546356hypothetical protein
LOC_Os12g38410OsAffx.32083.4.S1_x_at1/1112+23542601..23546356hypothetical protein
LOC_Os12g38420Os.6211.1.S1_at11/1112+23550623..23551541expressed protein
LOC_Os12g38430Os.6211.1.S1_at11/1112+23556107..23559945RNA recognition motif family protein, expressed
LOC_Os12g38440Os.37689.1.S1_at11/1112+23562565..23566673XH domain containing protein, expressed
LOC_Os12g38450OsAffx.7831.1.S1_at11/1112+23569296..23570876Exostosin family protein, expressed
LOC_Os12g38460OsAffx.20011.1.S1_at10/1112+23572909..23577850RNA recognition motif family protein
LOC_Os12g38470OsAffx.20012.1.S1_at11/1112+23581659..23582114hypothetical protein
LOC_Os12g38480Os.23924.2.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38480Os.23924.1.S1_at11/1112+23583542..23590522expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37689.1.S1_at--555--8911Chr12:23565174..23565198 (25 bp)
TGACCTAAGCTGGAATCCCTTCAAG
LOC_Os12g38440
Os.37689.1.S1_at--894--5311Chr12:23565379..23565403 (25 bp)
GAAGGTGCTCACAAGGCTGTCATGA
LOC_Os12g38440
Os.37689.1.S1_at--614--7251Chr12:23565433..23565457 (25 bp)
GTCCTAGCTGACAGAAGCATCGCGT
LOC_Os12g38440
Os.37689.1.S1_at--937--4971Chr12:23565449..23565473 (25 bp)
GCATCGCGTATGAGCTGTGGAACTA
LOC_Os12g38440
Os.37689.1.S1_at--99--891Chr12:23565488..23565512 (25 bp)
AGGCCACCCTGCGTGAGTGTGTTGA
LOC_Os12g38440
Os.37689.1.S1_at--689--2531Chr12:23565536..23565560 (25 bp)
AACTCACAGTGACCAAGCGCAGGAA
LOC_Os12g38440
Os.37689.1.S1_at--55--9771Chr12:23566405..23566429 (25 bp)
TAATCCATGAAGTTCCTGAGCAAGA
LOC_Os12g38440
Os.37689.1.S1_at--26--8211Chr12:23566432..23566456 (25 bp)
GGAAGTCTTAGCTTGCTTATGTCTT
LOC_Os12g38440
Os.37689.1.S1_at--643--5371Chr12:23566492..23566516 (25 bp)
GAAGAACCTGATCGTATGAAGCAAC
LOC_Os12g38440
Os.37689.1.S1_at--92--8311Chr12:23566590..23566614 (25 bp)
GGCTTATGACCACTGTACTGCTTGT
LOC_Os12g38440
Os.37689.1.S1_at--493--5091Chr12:23566615..23566639 (25 bp)
GCACCCAGCTCATTACATGCTATAG
LOC_Os12g38440
Target Sequence 
TGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGC
TGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGANTATAAT
GTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGA
GTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGG
NCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATG
ACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGNATGNAAAACTATGAACTACTACTACTACTACTAC
TAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACAT
GCTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis