Browse Element(s) Details


OsAffx.20012.1.S1_at

Description tigr:9640.m03741
TID=OsAffx.20012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38430Os.6211.1.S1_at11/1112+23556107..23559945RNA recognition motif family protein, expressed
LOC_Os12g38440Os.37689.1.S1_at11/1112+23562565..23566673XH domain containing protein, expressed
LOC_Os12g38450OsAffx.7831.1.S1_at11/1112+23569296..23570876Exostosin family protein, expressed
LOC_Os12g38460OsAffx.20011.1.S1_at10/1112+23572909..23577850RNA recognition motif family protein
LOC_Os12g38470OsAffx.20012.1.S1_at11/1112+23581659..23582114hypothetical protein
LOC_Os12g38480Os.23924.2.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38480Os.23924.1.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38490Os.14250.1.S1_at11/1112+23601128..23604134GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20012.1.S1_at--391--3011Chr12:23582025..23582049 (25 bp)
AATGCATATTGTGGTCGATTTGGCC
LOC_Os12g38470
OsAffx.20012.1.S1_at--1045--3491Chr12:23582001..23582025 (25 bp)
CATGGATTTTTTCTCGCCAACAGTC
LOC_Os12g38470
OsAffx.20012.1.S1_at--246--2131Chr12:23581982..23582006 (25 bp)
ACAGTCATGGAATCGTTGATGCTCG
LOC_Os12g38470
OsAffx.20012.1.S1_at--306--3191Chr12:23581948..23581972 (25 bp)
CAATGCGACTTGAGATCCTAGAGGT
LOC_Os12g38470
OsAffx.20012.1.S1_at--1064--7751Chr12:23581823..23581847 (25 bp)
GGTGACAACCATTGTTACAACGGTC
LOC_Os12g38470
OsAffx.20012.1.S1_at--329--9851Chr12:23581808..23581832 (25 bp)
TACAACGGTCAGTGGACATGCCTCT
LOC_Os12g38470
OsAffx.20012.1.S1_at--918--8711Chr12:23581779..23581803 (25 bp)
TGTCGATCTCCACAACCATTATCGT
LOC_Os12g38470
OsAffx.20012.1.S1_at--448--3591Chr12:23581763..23581787 (25 bp)
CATTATCGTCGCCTATGCATGCTAG
LOC_Os12g38470
OsAffx.20012.1.S1_at--1080--10111Chr12:23581750..23581774 (25 bp)
TATGCATGCTAGGTCTGGAGAGGTT
LOC_Os12g38470
OsAffx.20012.1.S1_at--828--7531Chr12:23581716..23581740 (25 bp)
GTGGCTTTGTCTAGGACCAGACCTT
LOC_Os12g38470
OsAffx.20012.1.S1_at--56--1391Chr12:23581698..23581722 (25 bp)
AGACCTTCTGCAGCGATACATCATC
LOC_Os12g38470
Target Sequence 
AATGCATATTGTGGTCGATTTGGCCATGGATTTTTTCTCGCCAACAGTCATGGAATCGTTGATGCTCGAGGATAAGGCAA
TGCGACTTGAGATCCTAGAGGTAAGTAACGAAGAATGTAGGAGGGAGGAGGAGGCTCGGGGGATCGAGAAGGCGGCAACA
GCGAGTTGCCTTCCTCAACTGCTGGAGAGGGTAGCTCGAGGTGGTGACAACCATTGTTACAACGGTCAGTGGACATGCCT
CTTCCCTGTCGATCTCCACAACCATTATCGTCGCCTATGCATGCTAGGTCTGGAGAGGTTGGTGGCGTGGTGGCTTTGTC
TAGGACCAGACCTTCTGCAGCGATACATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis