Browse Element(s) Details


Os.14250.1.S1_at

Description gb:AK121943.1
DB_XREF= gi:37991566
TID=Os.14250.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107F03, full insert sequence.
FL= gb:AK121943.1 gb:AK111522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3849011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38460OsAffx.20011.1.S1_at10/1112+23572909..23577850RNA recognition motif family protein
LOC_Os12g38470OsAffx.20012.1.S1_at11/1112+23581659..23582114hypothetical protein
LOC_Os12g38480Os.23924.2.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38480Os.23924.1.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38490Os.14250.1.S1_at11/1112+23601128..23604134GRAS family transcription factor containing protein, expressed
LOC_Os12g38500Os.14919.1.S1_at3/1112+23609356..23616658transposon protein, putative, Mutator sub-class
LOC_Os12g38500OsAffx.22217.1.S1_x_at1/1112+23609356..23616658transposon protein, putative, Mutator sub-class
LOC_Os12g38500Os.56216.1.S1_at1/1112+23609356..23616658transposon protein, putative, Mutator sub-class
LOC_Os12g38510NANA12+23617079..23617923GRF zinc finger family protein
LOC_Os12g38520OsAffx.32046.1.S1_x_at1/1112+23622833..23623363hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14250.1.S1_at--299--6231Chr12:23603564..23603584 (21 bp)
GATGGACCCAATGACTTGAGGCTAT
LOC_Os12g38490
Os.14250.1.S1_at--299--31Chr12:23603681..23603705 (25 bp)
ATTGGTAGCCCAAGTTGTTGAAGCC
LOC_Os12g38490
Os.14250.1.S1_at--684--731Chr12:23603775..23603799 (25 bp)
ATGTTGCAGCTTAGTGCCACACTAC
LOC_Os12g38490
Os.14250.1.S1_at--471--3091Chr12:23603809..23603833 (25 bp)
AATAGACTTAGGTCCTGGTCCGGAT
LOC_Os12g38490
Os.14250.1.S1_at--143--8611Chr12:23603824..23603848 (25 bp)
TGGTCCGGATGATGTTCGCTGCAGC
LOC_Os12g38490
Os.14250.1.S1_at--692--7891Chr12:23603855..23603879 (25 bp)
GGTTCTTGCGATCAATCCAGTCAGT
LOC_Os12g38490
Os.14250.1.S1_at--386--571Chr12:23603869..23603893 (25 bp)
ATCCAGTCAGTTGATCCGGTTGTAA
LOC_Os12g38490
Os.14250.1.S1_at--127--5571Chr12:23603896..23603920 (25 bp)
GACACCAGTTACTCTGTTTTTACTA
LOC_Os12g38490
Os.14250.1.S1_at--1022--10071Chr12:23603919..23603943 (25 bp)
TAGGTGCTTACTGCACTGTGGCAGA
LOC_Os12g38490
Os.14250.1.S1_at--51--10071Chr12:23603988..23604012 (25 bp)
TAGTCTTGTGCTGTTGTCAACCTGA
LOC_Os12g38490
Os.14250.1.S1_at--244--5971Chr12:23604011..23604035 (25 bp)
GAGAACTATCTTTTCGGCCAACTTA
LOC_Os12g38490
Target Sequence 
GATGGACCCAATGACTTGAGGCTATGAGGGAGAATTGGTAGCCCAAGTTGTTGAAGCCATAAGATAACCAAGCATGCATG
TAGATATCCATGTTTTTATGTGATGTTAATTAGTTGCTTCTGNTGTCATGTTGCAGCTTAGTGCCACACTACCACTTAGA
AAATAGACTTAGGTCCTGGTCCGGATGATGTTCGCTGCAGCGTCACCGGTTCTTGCGATCAATCCAGTCAGTTGATCCGG
TTGTAATTGACACCAGTTACTCTGTTTTTACTAGGTGCTTACTGCACTGTGGCAGACAGTAACATTGTAATATGCTCAAA
ATGTTGAACTGGGTTTTGGCTAGTCTTGTGCTGTTGTCAACCTGAGAACTATCTTTTCGGCCAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis