Browse Element(s) Details


Os.23924.1.S1_at

Description gb:AK067552.1
DB_XREF= gi:32977570
TID=Os.23924.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109E02, full insert sequence.
FL= gb:AK067552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3848011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38430Os.6211.1.S1_at11/1112+23556107..23559945RNA recognition motif family protein, expressed
LOC_Os12g38440Os.37689.1.S1_at11/1112+23562565..23566673XH domain containing protein, expressed
LOC_Os12g38450OsAffx.7831.1.S1_at11/1112+23569296..23570876Exostosin family protein, expressed
LOC_Os12g38460OsAffx.20011.1.S1_at10/1112+23572909..23577850RNA recognition motif family protein
LOC_Os12g38470OsAffx.20012.1.S1_at11/1112+23581659..23582114hypothetical protein
LOC_Os12g38480Os.23924.2.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38480Os.23924.1.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38490Os.14250.1.S1_at11/1112+23601128..23604134GRAS family transcription factor containing protein, expressed
LOC_Os12g38500Os.14919.1.S1_at3/1112+23609356..23616658transposon protein, putative, Mutator sub-class
LOC_Os12g38500OsAffx.22217.1.S1_x_at1/1112+23609356..23616658transposon protein, putative, Mutator sub-class
LOC_Os12g38500Os.56216.1.S1_at1/1112+23609356..23616658transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23924.1.S1_at--295--2631Chr12:23589952..23589976 (25 bp)
AACCATGGGTTTCATTGGGTCCACA
LOC_Os12g38480
Os.23924.1.S1_at--819--8951Chr12:23590027..23590051 (25 bp)
TGACTTGGGCGTACGTGTGCACTGC
LOC_Os12g38480
Os.23924.1.S1_at--780--3331Chr12:23590046..23590070 (25 bp)
CACTGCAGGGCAATGCGGCTGTGAT
LOC_Os12g38480
Os.23924.1.S1_at--304--4491Chr12:23590075..23590099 (25 bp)
GCCGGTTTAATTTCCTCTTAGCAAT
LOC_Os12g38480
Os.23924.1.S1_at--1097--3751Chr12:23590089..23590113 (25 bp)
CTCTTAGCAATGGTAGGCCCGGATA
LOC_Os12g38480
Os.23924.1.S1_at--357--7091Chr12:23590152..23590176 (25 bp)
GTCAAGCCCCAGGTATAGCTTCATG
LOC_Os12g38480
Os.23924.1.S1_at--981--8511Chr12:23590189..23590213 (25 bp)
TGGAGCACTGAAGCTACCCTATCGT
LOC_Os12g38480
Os.23924.1.S1_at--334--10151Chr12:23590208..23590232 (25 bp)
TATCGTTCTCCCAGCTTACATGTGC
LOC_Os12g38480
Os.23924.1.S1_at--364--8691Chr12:23590228..23590252 (25 bp)
TGTGCTGCAAAACCTCTGAATTCAA
LOC_Os12g38480
Os.23924.1.S1_at--276--211Chr12:23590346..23590370 (25 bp)
ATTTGCTCTAGTGACTCTACTGTAT
LOC_Os12g38480
Os.23924.1.S1_at--456--8311Chr12:23590397..23590421 (25 bp)
GGCTAGGCAGTGATTTTCCATGCAT
LOC_Os12g38480
Target Sequence 
AACCATGGGTTTCATTGGGTCCACAATTAGGCCAACAGATAGCAACATCTTCTCTGGAACCTCACCCTTGACCGTTGACT
TGGGCGTACGTGTGCACTGCAGGGCAATGCGGCTGTGATGTGAGCCGGTTTAATTTCCTCTTAGCAATGGTAGGCCCGGA
TAGACACTGGCCCCACCTGTCAGCGACTCAATGTCAAGCAGTCAAGCCCCAGGTATAGCTTCATGGATTGGAGAATTTGG
AGCACTGAAGCTACCCTATCGTTCTCCCAGCTTACATGTGCTGCAAAACCTCTGAATTCAACGGTGATGACTATGAGATA
AGTTATAGTGAGTTCATCGTCAGATCATGGAAATCATGTTTTAATCTGTAAGGCTGATTTTTCTTTTGTCATATATTTGC
TCTAGTGACTCTACTGTATATATGGTGATTGAATAGGCTAGGGTAGGCTAGGCAGTGATTTTCCATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis