Browse Element(s) Details


OsAffx.20011.1.S1_at

Description tigr:9640.m03740
TID=OsAffx.20011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RSSG8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3846010/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38420Os.6211.1.S1_at11/1112+23550623..23551541expressed protein
LOC_Os12g38430Os.6211.1.S1_at11/1112+23556107..23559945RNA recognition motif family protein, expressed
LOC_Os12g38440Os.37689.1.S1_at11/1112+23562565..23566673XH domain containing protein, expressed
LOC_Os12g38450OsAffx.7831.1.S1_at11/1112+23569296..23570876Exostosin family protein, expressed
LOC_Os12g38460OsAffx.20011.1.S1_at10/1112+23572909..23577850RNA recognition motif family protein
LOC_Os12g38470OsAffx.20012.1.S1_at11/1112+23581659..23582114hypothetical protein
LOC_Os12g38480Os.23924.2.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38480Os.23924.1.S1_at11/1112+23583542..23590522expressed protein
LOC_Os12g38490Os.14250.1.S1_at11/1112+23601128..23604134GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20011.1.S1_at--198--2372Chr09:10064667..10064693 (25 bp)
AAACCAACTGTCATTGAGCCTGCAT
NONE
OsAffx.20011.1.S1_at--166--8931Chr12:23573763..23573787 (25 bp)
TGAGCCTGCATCTCTTACTCAGAAG
LOC_Os12g38460
OsAffx.20011.1.S1_at--707--2491Chr12:23573655..23573679 (25 bp)
AACATGCTTCGTTGACTGTCCAGTT
LOC_Os12g38460
OsAffx.20011.1.S1_at--700--5571Chr12:23573630..23573654 (25 bp)
GAAAGGCCAGCAGTAACTCCAAGCA
LOC_Os12g38460
OsAffx.20011.1.S1_at--181--2971Chr12:23573488..23573590 (25 bp)
AATGGGACAGGTTCCTGGCTCCATA
LOC_Os12g38460
OsAffx.20011.1.S1_at--655--131Chr12:23573452..23573476 (25 bp)
ATTACTGCATCATCTGTCGATCCTA
LOC_Os12g38460
OsAffx.20011.1.S1_at--425--6351Chr12:23573426..23573450 (25 bp)
GATGCTGTGATGCAGCTTGTCCCAT
LOC_Os12g38460
OsAffx.20011.1.S1_at--1142--3611Chr12:23573411..23573435 (25 bp)
CTTGTCCCATGCCTTCATAAGATTT
LOC_Os12g38460
OsAffx.20011.1.S1_at--369--651NONE
ATGCATGACCTGTGGCACTGCTGGA
NONE
OsAffx.20011.1.S1_at--346--6911Chr12:23572988..23573012 (25 bp)
GTATGCACAGCATCGCATGTCGAGG
LOC_Os12g38460
OsAffx.20011.1.S1_at--458--9071Chr12:23572962..23572986 (25 bp)
TGCTTCCTGGCTTCAGTAACATTAC
LOC_Os12g38460
Target Sequence 
AAACCAACTGTCATTGAGCCTGCATCTCTTACTCAGAAGATTGTTTCTGAGCCTATGAGGAAGACTGATTTGTTTGAATC
TGGACTTGCAAGGAGGATTGGTTTGATTGGTTCCAGACCAACAACATGCTTCGTTGACTGTCCAGTTGAAAGGCCAGCAG
TAACTCCAAGCAACTGTGAGGCTGATATGAGATTCTCTTTCTTCCAATCACAATGGGACAGGTTCCTGGCTCCATATCCC
AAGAGTGATTACTGCATCATCTGTCGATCCTATGATGCTGTGATGCAGCTTGTCCCATGCCTTCATAAGATTTGTGTTGC
CTGCATGATGAGATGCAATGTCAGGGCATGCATGACCTGTGGCACTGCTGGAGTCATGGAGCGTGCATCAGATCAAAGGT
GCCAGCTGATGGTGGTCTGCCGTGGAGCTGAGGCGATTGTCAGATGTTCCCCCTGTATGCACAGCATCGCATGTCGAGGA
TGCTTCCTGGCTTCAGTAACATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis