Browse Element(s) Details


Os.37711.1.S1_at

Description gb:AK100554.1
DB_XREF= gi:32985763
TID=Os.37711.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514H03.29 (P0514H03.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103M01, full insert sequence.
FL= gb:AK100554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g474802/11hypothetical protein
LOC_Os05g199801/11hypothetical protein
LOC_Os05g062301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37711.1.S1_at--1152--491Chr01:14591663..14591687 (25 bp)
ATCGTGCTCCATGTGATTAGTTGCA
NONE
Os.37711.1.S1_at--1081--10375Chr10:5557873..5557892 (20 bp)
TTTTACTCGTCGTCTCTATGACATG
NONE
Os.37711.1.S1_at--683--8871Chr01:14591527..14591551 (25 bp)
TGATGGAGGGCTGTTACTGTGCAAC
NONE
Os.37711.1.S1_at--525--8791Chr01:14591516..14591540 (25 bp)
TGTTACTGTGCAACGTCGAGCCCAT
NONE
Os.37711.1.S1_at--222--151Chr01:14591419..14591443 (25 bp)
ATTACCTATCACAAGACACCGGCCA
NONE
Os.37711.1.S1_at--851--5631Chr01:14591405..14591429 (25 bp)
GACACCGGCCAGTTATAGCAAGATC
NONE
Os.37711.1.S1_at--1127--2356Chr06:6079341..6079365 (25 bp)
AAAGCCACCAGGATCCTAGTTTCAC
NONE
Os.37711.1.S1_at--1010--5859Chr12:14390538..14390563 (25 bp)
GAGCCTGTAATTTTTTCATTCGTAC
NONE
Os.37711.1.S1_at--618--9591Chr01:14591256..14591280 (25 bp)
TCATTCGTACGACTATTTTGTGGTA
NONE
Os.37711.1.S1_at--604--2512Chr06:8910091..8910115 (25 bp)
AACATATTACTACACGATTGCTACG
NONE
Os.37711.1.S1_at--385--65925Chr10:5558192..5558331 (25 bp)
GATTGCTACGAGATCATGGGCTATA
NONE
Target Sequence 
ATCGTGCTCCATGTGATTAGTTGCAGAGGATAGGGTGGAGTCCGCTGGGGATGGAGGTTGTTTGCTATTTTTCTTTTACT
CGTCGTCTCTATGACATGAACAAGAATGTTTTTGTATTTTTTTCGTGCTTGCTAGATGATGGAGGGCTGTTACTGTGCAA
CGTCGAGCCCATCTCTATACCACACCGCTACACCCTTCCATGATTCCATCATGGACTACCACTTGCCACCCAGTTGCCCT
CTCCATTACCTATCACAAGACACCGGCCAGTTATAGCAAGATCCAGCAAAGCCACCAGGATCCTAGTTTCACAATGGATT
TTTGGCTGAATCATCTTTTTTGTTTTCTAGTTTGATTCACCTGTGAGTAATTTTTATCACTTGTGTATGATTGAGCCTGT
AATTTTTTCATTCGTACGACTATTTTGTGGTACAGATTAACAATACTCTTAGTATCAGTTTTTACTCTTATACTGTGTAT
TGAACACATTAGTAAACATATTACTACACGATTGCTACGAGATCATGGGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis