Browse Element(s) Details


Os.37727.1.S1_at

Description gb:AK060683.1
DB_XREF= gi:32970701
TID=Os.37727.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F09, full insert sequence.
FL= gb:AK060683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1557011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15510NANA6+8797638..8801935transposon protein, putative, unclassified
LOC_Os06g15520Os.28943.1.S1_x_at1/116+8802581..8803516retrotransposon protein, putative, unclassified
LOC_Os06g15530NANA6+8804222..8805571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15540NANA6+8809724..8811889retrotransposon protein, putative, unclassified
LOC_Os06g15550OsAffx.15441.1.S1_at11/116+8820963..8822144hypothetical protein
LOC_Os06g15560Os.54514.1.S1_at3/116+8824457..8826102expressed protein
LOC_Os06g15560OsAffx.31349.2.S1_x_at1/116+8824457..8826102expressed protein
LOC_Os06g15570Os.37727.1.S1_at11/116+8825990..8831305retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580OsAffx.27649.1.S1_at9/116+8832274..8833387hypothetical protein
LOC_Os06g15590OsAffx.27650.1.S1_at11/116+8833949..8834630PGP224, putative
LOC_Os06g15600OsAffx.15442.1.S1_at11/116+8835979..8836908Chemocyanin precursor, putative
LOC_Os06g15610NANA6+8845792..8846093hypothetical protein
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15630NANA6+8853014..8854636retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37727.1.S1_at--989--2972Chr06:8831421..8831445 (25 bp)
AATGGGCCATGTAACCTGTATCGCT
NONE
Os.37727.1.S1_at--994--3872Chr06:8831406..8831430 (25 bp)
CTGTATCGCTGGCATGAGCTGGCAT
NONE
Os.37727.1.S1_at--618--693Chr12:23054019..23054043 (25 bp)
ATGAGCTGGCATCTGTCTTGTGAGA
NONE
Os.37727.1.S1_at--517--9833Chr12:23054189..23054213 (25 bp)
TAAACACATCTCTGTTCTTCCTGAG
NONE
Os.37727.1.S1_at--43--10672Chr06:8831206..8831230 (25 bp)
TTCCTGAGTTGTTCGAGTTCTTCCA
LOC_Os06g15570
Os.37727.1.S1_at--974--6052Chr06:8831192..8831216 (25 bp)
GAGTTCTTCCACTTTTCCTTTTCAT
LOC_Os06g15570
Os.37727.1.S1_at--97--3592Chr06:8831170..8831194 (25 bp)
CATTTTCCTTAGTTGTGTTGAGTCC
LOC_Os06g15570
Os.37727.1.S1_at--851--8812Chr06:8831155..8831179 (25 bp)
TGTTGAGTCCATCTGGTGACGCTGA
LOC_Os06g15570
Os.37727.1.S1_at--178--7771Chr06:8831141..8831165 (25 bp)
GGTGACGCTGACAATTTCTGGTATC
LOC_Os06g15570
Os.37727.1.S1_at--553--3152Chr06:27308271..27308385 (25 bp)
AATTCTCTTGGCTTGGTTGTAAAAT
NONE
Os.37727.1.S1_at--895--991Chr06:8831065..8831089 (25 bp)
AGGATTGGGATCTATTCTTCGGAAT
LOC_Os06g15570
Target Sequence 
AATGGGCCATGTAACCTGTATCGCTGGCATGAGCTGGCATCTGTCTTGTGAGAGGGGAAGGAAGGGAGTTGGTAGCGAGA
GAGAGTATAAGAACTGAGGTTTCTAAATTGTAAGGGACTTTTGGCAATCTGGTGGCGAATGGCGGCGGCGGCTCAACCCT
GTTGGGTTGGAGCAAGATTATCCTAGTAAAAGATTGCCTAAACACATCTCTGTTCTTCCTGAGTTGTTCGAGTTCTTCCA
CTTTTCCTTTTCATTTTCCTTAGTTGTGTTGAGTCCATCTGGTGACGCTGACAATTTCTGGTATCAGAGCCCTTTCGCCC
CAAAATTCTCTTGGCTTGGTTGTAAAATTCCAGGGAAGGATTGGGATCTATTCTTCGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis