Browse Element(s) Details


OsAffx.27650.1.S1_at

Description tigr:9634.m01563
TID=OsAffx.27650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1559011/11PGP224, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15540NANA6+8809724..8811889retrotransposon protein, putative, unclassified
LOC_Os06g15550OsAffx.15441.1.S1_at11/116+8820963..8822144hypothetical protein
LOC_Os06g15560Os.54514.1.S1_at3/116+8824457..8826102expressed protein
LOC_Os06g15560OsAffx.31349.2.S1_x_at1/116+8824457..8826102expressed protein
LOC_Os06g15570Os.37727.1.S1_at11/116+8825990..8831305retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580OsAffx.27649.1.S1_at9/116+8832274..8833387hypothetical protein
LOC_Os06g15590OsAffx.27650.1.S1_at11/116+8833949..8834630PGP224, putative
LOC_Os06g15600OsAffx.15442.1.S1_at11/116+8835979..8836908Chemocyanin precursor, putative
LOC_Os06g15610NANA6+8845792..8846093hypothetical protein
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15630NANA6+8853014..8854636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.1709.1.S1_x_at11/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15640Os.31497.2.S1_x_at6/116+8856882..8862471retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27650.1.S1_at--1129--5691Chr06:8834576..8834600 (25 bp)
GACTGCTTTGGAGATAGCGGAACCT
LOC_Os06g15590
OsAffx.27650.1.S1_at--17--8191Chr06:8834465..8834582 (25 bp)
GGAACCTGCTGCTTGACTTGCTGGT
LOC_Os06g15590
OsAffx.27650.1.S1_at--449--10711Chr06:8834448..8834472 (25 bp)
TTGCTGGTGCCCCTGCATTACGTTC
LOC_Os06g15590
OsAffx.27650.1.S1_at--285--151Chr06:8834432..8834456 (25 bp)
ATTACGTTCGGTCGCATTGCTGAGA
LOC_Os06g15590
OsAffx.27650.1.S1_at--735--7791Chr06:8834423..8834447 (25 bp)
GGTCGCATTGCTGAGATTGTGGACA
LOC_Os06g15590
OsAffx.27650.1.S1_at--95--6051Chr06:8834411..8834435 (25 bp)
GAGATTGTGGACAAAGGCTCAACAT
LOC_Os06g15590
OsAffx.27650.1.S1_at--1013--2931Chr06:8834398..8834422 (25 bp)
AAGGCTCAACATGTAGGCATATTAA
LOC_Os06g15590
OsAffx.27650.1.S1_at--170--8291Chr06:8834383..8834407 (25 bp)
GGCATATTAACTTATCACTTCGCGC
LOC_Os06g15590
OsAffx.27650.1.S1_at--567--10491Chr06:8834377..8834401 (25 bp)
TTAACTTATCACTTCGCGCTTTGGT
LOC_Os06g15590
OsAffx.27650.1.S1_at--1133--371Chr06:8834370..8834394 (25 bp)
ATCACTTCGCGCTTTGGTTCAAGCA
LOC_Os06g15590
OsAffx.27650.1.S1_at--149--5131Chr06:8834351..8834372 (22 bp)
GCACAGAAAACCATCAATCTTGATG
LOC_Os06g15590
Target Sequence 
GACTGCTTTGGAGATAGCGGAACCTGCTGCTTGACTTGCTGGTGCCCCTGCATTACGTTCGGTCGCATTGCTGAGATTGT
GGACAAAGGCTCAACATGTAGGCATATTAACTTATCACTTCGCGCTTTGGTTCAAGCACAGAAAACCATCAATCTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis