Browse Element(s) Details


Os.54514.1.S1_at

Description gb:AK105495.1
DB_XREF= gi:32990704
TID=Os.54514.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C06, full insert sequence.
FL= gb:AK105495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g155603/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15510NANA6+8797638..8801935transposon protein, putative, unclassified
LOC_Os06g15520Os.28943.1.S1_x_at1/116+8802581..8803516retrotransposon protein, putative, unclassified
LOC_Os06g15530NANA6+8804222..8805571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g15540NANA6+8809724..8811889retrotransposon protein, putative, unclassified
LOC_Os06g15550OsAffx.15441.1.S1_at11/116+8820963..8822144hypothetical protein
LOC_Os06g15560Os.54514.1.S1_at3/116+8824457..8826102expressed protein
LOC_Os06g15560OsAffx.31349.2.S1_x_at1/116+8824457..8826102expressed protein
LOC_Os06g15570Os.37727.1.S1_at11/116+8825990..8831305retrotransposon protein, putative, unclassified, expressed
LOC_Os06g15580OsAffx.27649.1.S1_at9/116+8832274..8833387hypothetical protein
LOC_Os06g15590OsAffx.27650.1.S1_at11/116+8833949..8834630PGP224, putative
LOC_Os06g15600OsAffx.15442.1.S1_at11/116+8835979..8836908Chemocyanin precursor, putative
LOC_Os06g15610NANA6+8845792..8846093hypothetical protein
LOC_Os06g15620Os.18395.1.S1_s_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620Os.48105.1.A1_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed
LOC_Os06g15620OsAffx.27652.1.S1_x_at11/116+8846990..8847810GAST1 protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54514.1.S1_at--227--2191Chr06:8825935..8825959 (25 bp)
ACACATGTTGCTCACTGTCAGCGTC
LOC_Os06g15560
Os.54514.1.S1_at--822--8732Chr06:8831153..8831177 (25 bp)
TGTCAGCGTCACCAGATGGACTCAA
NONE
Os.54514.1.S1_at--389--2012Chr06:8831259..8831283 (25 bp)
ACTAGGATAATCTTGCTCCAACCCA
NONE
Os.54514.1.S1_at--385--95Chr08:1302366..1302389 (24 bp)
ATTCGCCACCAGATTGCCAAAAGTC
NONE
Os.54514.1.S1_at--693--5553Chr06:8831343..8831367 (25 bp)
GAAACCTCAGTTCTTATACTCTCTC
NONE
Os.54514.1.S1_at--112--2753Chr06:8831399..8831423 (25 bp)
AAGACAGATGCCAGCTCATGCCAGC
NONE
Os.54514.1.S1_at--736--3572Chr06:8831442..8831466 (25 bp)
CATTCCGGCCCAACATATTTACGAT
NONE
Os.54514.1.S1_at--951--132Chr06:8831465..8831489 (25 bp)
ATTAGGCCTAATGACTCTGGCCGGC
NONE
Os.54514.1.S1_at--727--8232Chr06:8831526..8831550 (25 bp)
GGCACAGGCTTCATCTTCAGCTTGG
NONE
Os.54514.1.S1_at--954--2691Chr06:8826423..8826447 (25 bp)
AAGCTTCAGGAAAACGCGCCCGGAG
NONE
Os.54514.1.S1_at--1121--2891Chr06:8826454..8826478 (25 bp)
AAGGTCCTCCCAGGTGGCATCTTCA
NONE
Target Sequence 
ACACATGTTGCTCACTGTCAGCGTCACCAGATGGACTCAACACAACTAAGGAAAATGAAAAGGAAAAGTGGAAGAACTCG
AACAACTNNNGAAGAACAGAGATGTGTTTAGGCAATCTTTTACTAGGATAATCTTGCTCCAACCCAACAGGGTTGAGCCG
CCGCCGCCATTCGCCACCAGATTGCCAAAAGTCCCTTACAATTTAGAAACCTCAGTTCTTATACTCTCTCTCGCTACCAA
CTCCCTTCCTTCCCCTCTCACAAGACAGATGCCAGCTCATGCCAGCGATACAGGNTACATGGCCCATTCCGGCCCAACAT
ATTTACGATTAGGCCTAATGACTCTGGCCGGCCTCAAGTCTTCTTCTCCTCCTTCCTGCTCACCATCCGGCACAGGCTTC
ATCTTCAGCTTGGCGCTTGCACTCGGCTCCTCCTCGCCTGACGCCTTGACAATCCCTTCCCCTTGGAAAGTGGCTTGCCC
CCAAGCCAAAGCTTCAGGAAAACGCGCCCGGAGATCCTCAAGGTCCTCCCAGGTGGCATCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis