Browse Element(s) Details


Os.37797.1.A1_s_at

Description gb:AK072024.1
DB_XREF= gi:32982047
TID=Os.37797.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100E02, full insert sequence.
FL= gb:AK072024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3196011/11ATP/GTP binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31990NANA2+18897951..18898370hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_x_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32009NANA2+18903070..18903450NA
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37797.1.A1_s_at--736--5891Chr02:18884679..18884703 (25 bp)
GAGCTGTCAAACATGGCACCGAAAT
LOC_Os02g31960
Os.37797.1.A1_s_at--634--3071Chr02:18884573..18884597 (25 bp)
AATCATATTTTGTCGCCAGTGGTCA
LOC_Os02g31960
Os.37797.1.A1_s_at--534--8611Chr02:18884548..18884572 (25 bp)
TGGTGCTGATGCTGACTGTCATGGA
LOC_Os02g31960
Os.37797.1.A1_s_at--683--811Chr02:18884427..18884451 (25 bp)
ATGGTACTCGTCCAGTCCGCGGGAT
LOC_Os02g31960
Os.37797.1.A1_s_at--322--4671Chr02:18884409..18884433 (25 bp)
GCGGGATCTCGTGTCGCGAATTCAC
LOC_Os02g31960
Os.37797.1.A1_s_at--402--5211Chr02:18884392..18884416 (25 bp)
GAATTCACGAGCAGCCACGGTCGAA
LOC_Os02g31960
Os.37797.1.A1_s_at--958--8951Chr02:18884324..18884348 (25 bp)
TGACACGGCATCTTAATTTCGCACC
LOC_Os02g31960
Os.37797.1.A1_s_at--383--2951Chr02:18884294..18884318 (25 bp)
AAGGCGCAACCTTAGCTGGAGAAAC
LOC_Os02g31960
Os.37797.1.A1_s_at--245--8551Chr02:18884278..18884302 (25 bp)
TGGAGAAACTTGCAGGCTACCTGAA
LOC_Os02g31960
Os.37797.1.A1_s_at--584--6551Chr02:18884220..18884244 (25 bp)
GATTAGTTTACACCTGTCACCAATT
LOC_Os02g31960
Os.37797.1.A1_s_at--367--7111Chr02:18884205..18884229 (25 bp)
GTCACCAATTTGTGCTTCTCTTTGA
LOC_Os02g31960
Target Sequence 
GAGCTGTCAAACATGGCACCGAAATTTTGGAAGCCGTGGTTGATTTTGCAAGGGGTTATGTGCGGGCTCAACGGTGTTGG
ATCTGGTGATGGTGGCGCTAATAAAAAATCATATTTTGTCGCCAGTGGTCATGGTGCTGATGCTGACTGTCATGGAGCAT
GGATAGTGGCTAGCCTAGTGGCCCCACTAGTCAGCTGCTACGTGCTATATTTGCCAGGCAAGTTGGTTTAGTGAAAAGAA
GCAGCGCCATCCATGGTACTCGTCCAGTCCGCGGGATCTCGTGTCGCGAATTCACGAGCAGCCACGGTCGAAAAGGAGAG
ATGCAGGATTGCAACGCCGTGCNCCGTGCGTGTTGTGACACGGCATCTTAATTTCGCACCAAACGAAGGCGCAACCTTAG
CTGGAGAAACTTGCAGGCTACCTGAAGCTTGAAGAGTTCAGATCAATTGGTCAACTGAAGATTAGTTTACACCTGTCACC
AATTTGTGCTTCTCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37797.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis