Browse Element(s) Details


Os.37820.1.S1_x_at

Description gb:CF308064
DB_XREF= gi:33679825
DB_XREF=ABF--01-L18.g1
CLONE=ABF--01-L18
TID=Os.37820.1
CNT=106
FEA=FLmRNA
TIER=Stack
STK=10
UG=Os.37820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.12), mRNA
FL= gb:AK059999.1 gb:AK061529.1 gb:AK104236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0597011/11proline-rich protein, putative, expressed
LOC_Os10g059901/11proline-rich protein, putative, expressed
LOC_Os10g060001/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37820.1.S1_x_at--50--5873Chr10:3016263..3016287 (25 bp)
GAGCCATCCAAGATCGTGCCAATGT
LOC_Os10g06000
Os.37820.1.S1_x_at--370--751Chr10:2997551..2997575 (25 bp)
ATGTCGGAGGGCACCTTTGCTGCCG
LOC_Os10g05970
Os.37820.1.S1_x_at--926--5131Chr10:2997520..2997544 (25 bp)
GCAAGACCCACTACCGATCGGCGTT
LOC_Os10g05970
Os.37820.1.S1_x_at--423--8371Chr10:2997501..2997525 (25 bp)
GGCGTTGTGCGCGTCCGTGACCATC
LOC_Os10g05970
Os.37820.1.S1_x_at--17--9971Chr10:2997240..2997264 (25 bp)
TAGCCCTCCGGCGAATTAAGCAATG
LOC_Os10g05970
Os.37820.1.S1_x_at--158--652Chr12:17869964..17870108 (24 bp)
ATGCATGCATGGTTCGTTTGGTTAG
NONE
Os.37820.1.S1_x_at--421--6791Chr10:2997186..2997210 (25 bp)
GTTAGTACGTTTGGTGTTGTTGCAT
LOC_Os10g05970
Os.37820.1.S1_x_at--777--7411Chr10:2997173..2997197 (25 bp)
GTGTTGTTGCATATGATTTCCTGTC
LOC_Os10g05970
Os.37820.1.S1_x_at--963--10291Chr10:2997157..2997181 (25 bp)
TTTCCTGTCATGTCAGTTTGTCTGC
LOC_Os10g05970
Os.37820.1.S1_x_at--573--6331Chr10:2997114..2997138 (25 bp)
GATGCATTAGCTTTTACTCACAAGT
LOC_Os10g05970
Os.37820.1.S1_x_at--809--7471Chr10:2997076..2997100 (25 bp)
GTGTGTCTATTTGTTTGGTATCAGC
LOC_Os10g05970
Target Sequence 
GAGCCATCCAAGATCGTGCCAATGTCGGAGGGCACCTTTGCTGCCGTCGCCGGCAAGACCCACTACCGATCGGCGTTGTG
CGCGTCCGTGACCATCTGCGGCCCAATCAAGAAGAAGATCATAGACCACTTCCACAAGAAGCCGGTGCCACCCAAGCCGG
AGCCAAAGCCGGAGCCACCCAAGCCCAAGCCTGAGCCGGAGCACCCATTCCTCGACCACATCCACAAGAAGGAGAAGCAC
TTCTTCGACCACTTCCACAAGAAGCCCGTGCCACCCAAGCCTGAGCCTAAGCCCGAGCCCAAGCCGCAGCCTGCGCCAGA
GTACCACAACCCTAGCCCTCCGGCGAATTAAGCAATGGAAGTTTGCATGCATGCATGGTTCGTTTGGTTAGTACGTTTGG
TGTTGTTGCATATGATTTCCTGTCATGTCAGTTTGTCTGCAGAATAATGGTTTTCTTTGATGCATTAGCTTTTACTCACA
AGTTTAATTTGTGTGTGTGTGTCTATTTGTTTGGTATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37820.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis