Browse Element(s) Details


Os.37905.1.S1_at

Description gb:AK106910.1
DB_XREF= gi:32992119
TID=Os.37905.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.13 (P0707D10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A06, full insert sequence.
FL= gb:AK106910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g457207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45670OsAffx.23673.1.S1_at11/111+26260498..26260812hypothetical protein
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37905.1.S1_at--633--1871Chr01:26285120..26285144 (25 bp)
ACGAGCTCGGGCAGAGACTGGTCAT
LOC_Os01g45720
Os.37905.1.S1_at--749--8531Chr01:26285144..26285168 (25 bp)
TGGAGATGTACAAGTCCGTCCTCGC
LOC_Os01g45720
Os.37905.1.S1_at--267--631Chr01:26285188..26285212 (25 bp)
ATGCTCCAGGCATCAAGGGCGCAAT
LOC_Os01g45720
Os.37905.1.S1_at--584--551Chr01:26285246..26285270 (25 bp)
ATCCGCGCAAGCTTAACGTGAACTA
LOC_Os01g45720
Os.37905.1.S1_at--163--8451Chr01:26285319..26285343 (25 bp)
GGCCAGACCGGCTAGAAGACACTTA
LOC_Os01g45720
Os.37905.1.S1_at--1022--131Chr01:26285343..26285367 (25 bp)
ATTAGACGCTCATAACCCTTGGATT
LOC_Os01g45720
Os.37905.1.S1_at--1010--8551Chr01:26285362..26285386 (25 bp)
TGGATTCCCTTTCATCCCTAGAAAA
LOC_Os01g45720
Os.37905.1.S1_at--811--6671Chr01:26285419..26285443 (25 bp)
GTTGCTTCTGCTTCATCTATATATG
NONE
Os.37905.1.S1_at--25--251Chr01:26285437..26285461 (25 bp)
ATATATGTCCAGGATCCCTTCTTGT
NONE
Os.37905.1.S1_at--91--6391Chr01:26285449..26285473 (25 bp)
GATCCCTTCTTGTCTGTATATCCAA
NONE
Os.37905.1.S1_at--674--4751NONE
GCTGACGTGCCAGCTACATAACGTG
NONE
Target Sequence 
ACGAGCTCGGGCAGAGACTGGTCATGGAGATGTACAAGTCCGTCCTCGCGTCGAGGGACCTCTCCAGCATGCTCCAGGCA
TCAAGGGCGCAATAGCATGCAACACTACATCGTGCAAAAGTGATGCATCCGCGCAAGCTTAACGTGAACTAACGGCTGTA
TATAAGGAGATGTACATATGTNTGTTGCACAATATGCATGGCCAGACCGGCTAGAAGACACTTATTAGACGCTCATAACC
CTTGGATTCCCTTTCATCCCTAGAAAAGAAANNCCGTGTTCCCTTCTGTTGCTTTNTAAGTTGCTTCTGCTTCATCTATA
TATGTCCAGGATCCCTTCTTGTCTGTATATCCAATTTTAAGCATGGTTGGCGCTGACGTGCCAGCTACATAACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis