Browse Element(s) Details


Os.37965.1.S1_at

Description gb:AK064852.1
DB_XREF= gi:32974870
TID=Os.37965.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H05, full insert sequence.
FL= gb:AK064852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g379399/11UNC93 homolog A, putative, expressed
LOC_Os12g045101/11RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g047301/11RNA polymerase Rpb5, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed
LOC_Os12g37970Os.11638.1.S1_at11/1112+23292073..23293502myb family transcription factor, putative, expressed
LOC_Os12g37980OsAffx.32076.1.S1_x_at11/1112+23304643..23311305Protein kinase domain containing protein
LOC_Os12g37980OsAffx.32076.1.S1_at11/1112+23304643..23311305Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37965.1.S1_at--166--6391Chr12:23274771..23274795 (25 bp)
GATCGTGAGGAAATCCGAAATCCTT
LOC_Os12g37939
Os.37965.1.S1_at--21--552Chr12:23274759..23274783 (25 bp)
ATCCGAAATCCTTTTGTCCAACAGA
LOC_Os12g37939
Os.37965.1.S1_at--1010--7252Chr12:23274744..23274768 (25 bp)
GTCCAACAGAAACCAATTCCAAAGT
LOC_Os12g37939
Os.37965.1.S1_at--1162--5292Chr12:23274652..23274676 (25 bp)
GAGCGATACGAAACCAAAAGGAAAT
LOC_Os12g37939
Os.37965.1.S1_at--1125--10692Chr12:23274565..23274589 (25 bp)
TTGCTGAATTGAAGTGATTGCATTC
LOC_Os12g37939
Os.37965.1.S1_at--854--9751Chr12:23274437..23274461 (25 bp)
TAATAGCTGCTCTTTTGTTCTGAAA
LOC_Os12g37939
Os.37965.1.S1_at--986--292Chr12:23274435..23274459 (25 bp)
ATAGCTGCTCTTTTGTTCTGAAAAA
LOC_Os12g37939
Os.37965.1.S1_at--652--2311Chr12:23274413..23274437 (25 bp)
AAAGGATGAGTGTTATTTCGACGTG
LOC_Os12g37939
Os.37965.1.S1_at--1041--6111Chr12:23274406..23274430 (25 bp)
GAGTGTTATTTCGACGTGGTTTGAT
LOC_Os12g37939
Os.37965.1.S1_at--757--6773Chr12:23274366..23274390 (25 bp)
GTTACTCCTTCGGTCATTAATATAT
NONE
Os.37965.1.S1_at--597--10492Chr12:23274350..23274374 (25 bp)
TTAATATATGAAGGGCCTCATCTTT
NONE
Target Sequence 
GATCGTGAGGAAATCCGAAATCCTTTTGTCCAACAGAAACCAATTCCAAAGTGGNGCCAATTTCACCNNACATNTNCTTN
ATCAGTGTTACCAACAACCNAAGCAGCACANACTGTATGCACGAGCGATACGAAACCAAAAGGAAATGANGTATCTGTCA
GTTGATGTNCAACACAACACCNCNCTGNCTNCCATTTGTTTCAGCGATNNTTTTGCTGAATTGAAGTGATTGCATTCAAA
ATTNGNNNGNCGGCCTTGTAGCAAAATCTNNTTTNNTNCNGTTGTTTCTGTTCCGTGGTTGTTTNTACCAAATGTAACAN
CANTCAAATATATATGTTTNTAATAGCTGCTCTTTTGTTCTGAAAAAGGATGAGTGTTATTTCGACGTGGTTTGATGAAA
AAAAGAAGAAGNNNGTTACTCCTTCGGTCATTAATATATGAAGGGCCTCATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis