Browse Element(s) Details


Os.37995.1.S1_at

Description gb:AK099517.1
DB_XREF= gi:32984726
TID=Os.37995.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030D01, full insert sequence.
FL= gb:AK099517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4270010/11thioredoxin family protein, expressed
LOC_Os09g178401/11Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein
LOC_Os02g42740Os.52752.1.S1_at10/112+25691080..25692876Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37995.1.S1_at--592--1371NONE
AGACCTCCTTCCAAGTTCCTGACGT
NONE
Os.37995.1.S1_at--925--911Chr02:25674218..25674242 (25 bp)
AGGCAGTTGGGCTTCAACCTTCACG
LOC_Os02g42700
Os.37995.1.S1_at--953--2631Chr02:25674203..25674227 (25 bp)
AACCTTCACGCCCAGATGGATATAT
LOC_Os02g42700
Os.37995.1.S1_at--930--10812Chr09:10915080..10915100 (21 bp)
TTGTCATCTATGAACTCCATTTCTT
LOC_Os09g17840
Os.37995.1.S1_at--399--5471Chr02:25674168..25674192 (25 bp)
GAACTCCATTTCTTTTCGAGAATAG
LOC_Os02g42700
Os.37995.1.S1_at--39--5951Chr02:25674139..25674163 (25 bp)
GAGAATCGTAAATTATGGAACCCCG
LOC_Os02g42700
Os.37995.1.S1_at--782--4191Chr02:25674118..25674142 (25 bp)
CCCGGTTTGGTAGTTGTATGTACAT
LOC_Os02g42700
Os.37995.1.S1_at--968--7391Chr02:25674087..25674111 (25 bp)
GTGATAACCGCTAATAAATGCAATT
LOC_Os02g42700
Os.37995.1.S1_at--388--3011Chr02:25674071..25674095 (25 bp)
AATGCAATTCAAGGCTGAGCCCTGC
LOC_Os02g42700
Os.37995.1.S1_at--81--9151Chr02:25674049..25674073 (25 bp)
TGCGTGGCCTTCTGGATCGAAGGTA
LOC_Os02g42700
Os.37995.1.S1_at--638--5311Chr02:25674022..25674046 (25 bp)
GAAGGTTGCTTCGAGTTGCTTGTTT
LOC_Os02g42700
Target Sequence 
AGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTT
GAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAA
GCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGA
TGATATTCAAGAACGGTGANAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCANNATCNACAAA
TACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGT
CATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTAC
ATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCGAAGGTATGGAAGGTT
GCTTCGAGTTGCTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis