Browse Element(s) Details


Os.38046.1.S1_s_at

Description gb:AK065869.1
DB_XREF= gi:32975887
TID=Os.38046.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045E16, full insert sequence.
FL= gb:AK065869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4951010/11Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed
LOC_Os03g49510Os.38046.1.S1_s_at10/113+28129401..28135291Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
LOC_Os03g49520Os.9674.1.S1_at11/113+28135377..28139289pinin/SDK/memA/ protein conserved region containing protein, expressed
LOC_Os03g49524Os.32285.1.S1_at11/113+28142975..28145688UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49530Os.14919.1.S1_at5/113+28150804..28156921hypothetical protein
LOC_Os03g49530Os.56216.1.S1_at1/113+28150804..28156921hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38046.1.S1_s_at--209--8871Chr03:28133962..28133986 (25 bp)
TGATGAGCCAGGTCCAGCAGTACGT
LOC_Os03g49510
Os.38046.1.S1_s_at--792--4351Chr03:28133975..28133999 (25 bp)
CCAGCAGTACGTGGTTCGCACATAA
LOC_Os03g49510
Os.38046.1.S1_s_at--126--6651Chr03:28134041..28134065 (25 bp)
GTTGATCTTGTTTTGCCAGGCACTG
LOC_Os03g49510
Os.38046.1.S1_s_at--954--4411NONE
GCCAGGCACTGGAAGGTTCCGTGTT
NONE
Os.38046.1.S1_s_at--361--5231Chr03:28134835..28134859 (25 bp)
GAATATGCCAGCTCGAGCTCGGAAA
LOC_Os03g49510
Os.38046.1.S1_s_at--435--5931Chr03:28134977..28135001 (25 bp)
GAGCATGCTGTCAAATCACTAAAAT
LOC_Os03g49510
Os.38046.1.S1_s_at--293--2251Chr03:28134998..28135022 (25 bp)
AAATTCGACCCTCTTTCGATATCAG
LOC_Os03g49510
Os.38046.1.S1_s_at--808--2931Chr03:28135125..28135149 (25 bp)
AAGGCTTTCCCTGAGCGAGACTGAA
LOC_Os03g49510
Os.38046.1.S1_s_at--853--2251Chr03:28135154..28135178 (25 bp)
AAATAGCAGCGATGCGGCCACACAT
LOC_Os03g49510
Os.38046.1.S1_s_at--98--10471Chr03:28135221..28135245 (25 bp)
TTACTTTACAGTCGGCAAGCTTCTT
LOC_Os03g49510
Os.38046.1.S1_s_at--937--9791Chr03:28135248..28135272 (25 bp)
TAAGCTCCAACGAATTTCAGTTCAA
LOC_Os03g49510
Target Sequence 
TGATGAGCCAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAG
TTGATCTTGTTTTGCCAGGCACTGGAAGGTTCCGTGTTCAGCTAGGGGTGAATATGCCAGCTCGAGCTCGGAAAGTGCAA
GAGGACGTGAACGTAGAAGTAGAAAACAGGGACACCATTGAAGAGTATGATGTTGTCCTATACCTTGGTATCATCGACAT
ACTACAAGAGTATAATGTGTCCAAAAGAGTTGAGCATGCTGTCAAATCACTAAAATTCGACCCTCTTTCGATATCAGCTG
TTGATCCAAATTTGTATTCGAGACGATTTATAAGTTTCTTGGAGAAGGTTTTCCCCGAGCAAGATTGAACAGTAAATAGA
TATTGCAAGTTTCTTGGAGAAGGCTTTCCCTGAGCGAGACTGAACAATAAATAGCAGCGATGCGGCCACACATCTAGATC
TTCTTGTAAAGAATTAACATATACCCCCATTGGAATTACTTTACAGTCGGCAAGCTTCTTATTAAGCTCCAACGAATTTC
AGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38046.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis