Browse Element(s) Details


Os.38060.2.S1_x_at

Description gb:NM_192420.1
DB_XREF= gi:34911923
GEN=OSJNBb0006H05.25
TID=Os.38060.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38060 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative CTP synthase (OSJNBb0006H05.25), mRNA.
PROD=putative CTP synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4657011/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46530OsAffx.30725.7.S1_s_at11/111+26819745..26820585hypothetical protein
LOC_Os01g46540NANA1+26823139..26826442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46554Os.47463.1.S1_x_at6/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46554Os.14491.2.S1_x_at5/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46590Os.26738.1.S1_at10/111+26849631..26854149peptidase M50 family protein, putative, expressed
LOC_Os01g46580Os.22471.2.S1_x_at11/111+26853580..26858468expressed protein
LOC_Os01g46580Os.22471.2.S1_at11/111+26853580..26858468expressed protein
LOC_Os01g46600Os.46021.1.S1_at8/111+26858869..26859332seed maturation protein PM41, putative, expressed
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38060.2.S1_x_at--760--1111Chr01:26846772..26846796 (25 bp)
AGTGATTGATTTTGCCTGTTCTATC
LOC_Os01g46570
Os.38060.2.S1_x_at--467--291Chr01:26846816..26846840 (25 bp)
ATAGCACAGAGTTTGACCCAGATAC
LOC_Os01g46570
Os.38060.2.S1_x_at--280--1271Chr01:26846835..26846859 (25 bp)
AGATACAATGTCACCCTGCGTCATT
LOC_Os01g46570
Os.38060.2.S1_x_at--113--10291Chr01:26846859..26846973 (25 bp)
TTTCATGCCAGAGGGTTCCAAAACC
LOC_Os01g46570
Os.38060.2.S1_x_at--828--5971Chr01:26847006..26847030 (25 bp)
GAGAACATATTTCCATGCCACTGCA
LOC_Os01g46570
Os.38060.2.S1_x_at--96--1431Chr01:26847304..26847328 (25 bp)
AGAAGGCCGGACTTTCATTTGTTGG
LOC_Os01g46570
Os.38060.2.S1_x_at--881--8031Chr01:26847482..26847506 (25 bp)
GGAGTACAGTTCCATCCTGAATTCA
LOC_Os01g46570
Os.38060.2.S1_x_at--642--2651Chr01:26847521..26847543 (23 bp)
AAGCCATCTCCACTTTTCTTAGGAT
LOC_Os01g46570
Os.38060.2.S1_x_at--583--9091Chr01:26848014..26848038 (25 bp)
TGCTCCAACCAAGTTCCAACATTGT
LOC_Os01g46570
Os.38060.2.S1_x_at--346--10811Chr01:26848035..26848059 (25 bp)
TTGTCAATCCAAATCCTATGCCCAG
LOC_Os01g46570
Os.38060.2.S1_x_at--881--2751Chr01:26848076..26848100 (25 bp)
AAGACGATTTACCATGCCAAGAAGC
LOC_Os01g46570
Target Sequence 
AGTGATTGATTTTGCCTGTTCTATCATGAAATTACCGGGTGCAAATAGCACAGAGTTTGACCCAGATACAATGTCACCCT
GCGTCATTTTCATGCCAGAGGGTTCCAAAACCCATATGGGGGCAACTATGCGGCTTGGATCAAGGAGAACATATTTCCAT
GCCACTGCATGCAAATCTGCAAAGCTGTATGGTAATGCTAGATTCGTAGACGAAAGACATCGACACAGATATGAGGTAAA
TCCTGAAATGGTACCAGAGTTTGAGAAGGCCGGACTTTCATTTGTTGGCAAGGATGAGAGTGGAAGACGCATGGAGATTA
TTGAACTACCCAGTCATAAATTTTTCATTGGAGTACAGTTCCATCCTGAATTCAAGTCAAGACCAGGGAAGCCATCTCCA
CTTTTCTTAGGATTAATAGCAGCAGCATCTGGACAACTAGAAACTTTGCTCCAACCAAGTTCCAACATTGTCAATCCAAA
TCCTATGCCCAGATTTCCCATTCCCAAAAAGACGATTTACCATGCCAAGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38060.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis