Browse Element(s) Details


Os.38090.1.S1_at

Description gb:AK068120.1
DB_XREF= gi:32978138
TID=Os.38090.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144D11.25 (B1144D11.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135L15, full insert sequence.
FL= gb:AK068120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3782011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38090.1.S1_at--557--5411Chr01:21479037..21479061 (25 bp)
GAAGCTGGATATAGTGTCCACAAAA
LOC_Os01g37820
Os.38090.1.S1_at--1013--5551Chr01:21479008..21479032 (25 bp)
GAAAGCCTAGTCCTATTATAGCAGA
LOC_Os01g37820
Os.38090.1.S1_at--213--1451Chr01:21478986..21479010 (25 bp)
AGAAGCAGCCGCTATCCTGCTGAGG
LOC_Os01g37820
Os.38090.1.S1_at--735--4271Chr01:21478971..21478995 (25 bp)
CCTGCTGAGGTGCTGATATAGTGCT
LOC_Os01g37820
Os.38090.1.S1_at--912--10011Chr01:21478945..21478969 (25 bp)
TAGCACGGATCCAATGTAGCTTCCT
LOC_Os01g37820
Os.38090.1.S1_at--975--6351Chr01:21478938..21478962 (25 bp)
GATCCAATGTAGCTTCCTGAATCAT
LOC_Os01g37820
Os.38090.1.S1_at--1140--8291Chr01:21478651..21478675 (25 bp)
GGCTTAGTGGTGCACGAGTCACTCA
LOC_Os01g37820
Os.38090.1.S1_at--645--6091Chr01:21478636..21478660 (25 bp)
GAGTCACTCACAGACCCTGATTGAA
LOC_Os01g37820
Os.38090.1.S1_at--768--3091Chr01:21478610..21478634 (25 bp)
AATATGAAAAGCCAGCCAGCCTTGT
LOC_Os01g37820
Os.38090.1.S1_at--1046--1391Chr01:21478576..21478600 (25 bp)
AGACTCAACTCAATGAAGCAGCATA
LOC_Os01g37820
Os.38090.1.S1_at--172--2151Chr01:21478502..21478526 (25 bp)
ACAGAAATTTTGCTTCGATTAATCA
LOC_Os01g37820
Target Sequence 
GAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGGTGCT
GATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATCCACCTCACAAGGGCTTCAACCGCTATGATCTTGCA
GTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGC
TTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGC
ATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCA
CGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGC
AGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis