Browse Element(s) Details


OsAffx.8975.1.S1_at

Description tigr:9629.m03580
TID=OsAffx.8975.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3778011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37740OsAffx.21224.1.S1_at11/111+21436104..21436938hypothetical protein
LOC_Os01g37740Os.51882.1.S1_at1/111+21436104..21436938hypothetical protein
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8975.1.S1_at--24--8231Chr01:21462326..21462350 (25 bp)
GGCAAGCCGGGCAAGGATTTCACCT
LOC_Os01g37780
OsAffx.8975.1.S1_at--351--2911Chr01:21462314..21462338 (25 bp)
AAGGATTTCACCTCGGAGTCTCATC
LOC_Os01g37780
OsAffx.8975.1.S1_at--525--6091Chr01:21462299..21462323 (25 bp)
GAGTCTCATCCAAACAAAGCAACCG
LOC_Os01g37780
OsAffx.8975.1.S1_at--289--2351Chr01:21462284..21462308 (25 bp)
AAAGCAACCGCAATGGAAGCCACCA
LOC_Os01g37780
OsAffx.8975.1.S1_at--518--2954Chr09:17872243..17872263 (21 bp)
AATGGAAGCCACCAAATGCCACCTA
NONE
OsAffx.8975.1.S1_at--415--2311Chr01:21462242..21462266 (25 bp)
AAAGGTACCTGTTCTATGCACACAA
LOC_Os01g37780
OsAffx.8975.1.S1_at--134--8751Chr01:21462212..21462236 (25 bp)
TGTACACCGTTGACGACTTGCTTAG
LOC_Os01g37780
OsAffx.8975.1.S1_at--1117--10451Chr01:21462191..21462215 (25 bp)
TTAGCCACCACGCTAGACCGGTGGA
LOC_Os01g37780
OsAffx.8975.1.S1_at--656--3911Chr01:21462125..21462149 (25 bp)
CTGGCCTCACGCTAGAAAGCGCGGA
LOC_Os01g37780
OsAffx.8975.1.S1_at--421--9471Chr01:21462080..21462104 (25 bp)
TCTGGGCTTATGTGGCCAGATCCGG
LOC_Os01g37780
OsAffx.8975.1.S1_at--79--6211Chr01:21461992..21462016 (25 bp)
GAGGCAGGACACTGGATGCCCCAGA
LOC_Os01g37780
Target Sequence 
GGCAAGCCGGGCAAGGATTTCACCTCGGAGTCTCATCCAAACAAAGCAACCGCAATGGAAGCCACCAAATGCCACCTACA
CACCAAAGGTACCTGTTCTATGCACACAACCACCTGTACACCGTTGACGACTTGCTTAGCCACCACGCTAGACCGGTGGA
GCTCGTCGGTGCCACCCGGACTCCACTACCGTCGGTCCGCACTGGCCTCACGCTAGAAAGCGCGGAGCCGCTAGAGAGGC
GCCGGATCTGGGCTTATGTGGCCAGATCCGGCTGTCCCCGCGCAGCCCTCGCCACCGGACCGAGACGAGGAGGCCGCCGA
TGCCAGGTGGGGAGGAGGCAGGACACTGGATGCCCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis