Browse Element(s) Details


OsAffx.21224.1.S1_at

Description tigr:9629.m03576
TID=OsAffx.21224.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3774011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37710NANA1+21409660..21413408hypothetical protein
LOC_Os01g37720Os.40855.2.S1_x_at8/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_x_at3/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_at1/111+21421725..21422612hypothetical protein
LOC_Os01g37740OsAffx.21224.1.S1_at11/111+21436104..21436938hypothetical protein
LOC_Os01g37740Os.51882.1.S1_at1/111+21436104..21436938hypothetical protein
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21224.1.S1_at--889--5171Chr01:21436795..21436819 (25 bp)
GCAAGGAGGAGAGTACCTCGAGCTC
LOC_Os01g37740
OsAffx.21224.1.S1_at--974--4111Chr01:21436675..21436699 (25 bp)
CGCGGAGGCGGAGGGTTCATTCGGG
LOC_Os01g37740
OsAffx.21224.1.S1_at--1--4431Chr01:21436402..21436646 (25 bp)
GCCATGGAAAGGTCCAGTCCTGTCT
LOC_Os01g37740
OsAffx.21224.1.S1_at--982--2311Chr01:21436395..21436417 (23 bp)
AAAGGTCCAGTCCTGTCTGGCGGAT
LOC_Os01g37740
OsAffx.21224.1.S1_at--443--7271Chr01:21436391..21436415 (25 bp)
GTCCAGTCCTGTCTGGCGGATCAAG
LOC_Os01g37740
OsAffx.21224.1.S1_at--269--7191Chr01:21436381..21436405 (25 bp)
GTCTGGCGGATCAAGCGCCCGGCAT
LOC_Os01g37740
OsAffx.21224.1.S1_at--176--8391Chr01:21436329..21436353 (25 bp)
GGCGAAGCACGCCACCGGCACTGTT
LOC_Os01g37740
OsAffx.21224.1.S1_at--645--4391Chr01:21436319..21436343 (25 bp)
GCCACCGGCACTGTTGCGGACAGGA
LOC_Os01g37740
OsAffx.21224.1.S1_at--744--991Chr01:21436226..21436250 (25 bp)
AGGATGTGCGGGAGCGTCAACTCCT
LOC_Os01g37740
OsAffx.21224.1.S1_at--539--8071Chr01:21436216..21436240 (25 bp)
GGAGCGTCAACTCCTGCATTGGGTA
LOC_Os01g37740
OsAffx.21224.1.S1_at--120--3851Chr01:21436203..21436227 (25 bp)
CTGCATTGGGTACCGGCACCAAGTG
LOC_Os01g37740
Target Sequence 
GCAAGGAGGAGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTTCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGA
GGGCACCGGTTACGACCCCTGATGCGCCGGCGGCGGAGAGCGCGGAGGCGGAGGGTTCATTCGGGGGGGGGGGAGAACGT
CCTCGAGCTGGAGGCCATGGAAAGGTCCAGTCCTGTCTGGCGGATCAAGCGCCCGGCATCACCGGTGGCGTGCTTGATCC
GCCGGCGGCGAAGCACGCCACCGGCACTGTTGCGGACAGGAGGCCGCCGCTTCACAAGGACAAGCCAACCGGTGGCGCCA
AGAAACCCCACACCTCCAGCGGCGGCGGCAGGATGTGCGGGAGCGTCAACTCCTGCATTGGGTACCGGCACCAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis