Browse Element(s) Details


Os.22790.1.A1_x_at

Description gb:CB666652
DB_XREF= gi:29670377
DB_XREF=OSJNEd13K04.r
CLONE=OSJNEd13K04
TID=Os.22790.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.22790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144D11.21 (B1144D11.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3777011/11RWD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37740OsAffx.21224.1.S1_at11/111+21436104..21436938hypothetical protein
LOC_Os01g37740Os.51882.1.S1_at1/111+21436104..21436938hypothetical protein
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22790.1.A1_x_at--730--2791Chr01:21452843..21453223 (25 bp)
AAGAGGAGGTCATTGTGCCCCATGG
LOC_Os01g37770
Os.22790.1.A1_x_at--824--9171Chr01:21452828..21452852 (25 bp)
TGCCCCATGGTGAAGCTGTTACTGT
LOC_Os01g37770
Os.22790.1.A1_x_at--902--5911Chr01:21452800..21452824 (25 bp)
GAGCTTTCTGGCTTGGAGAGATCGT
LOC_Os01g37770
Os.22790.1.A1_x_at--802--6031Chr01:21452783..21452807 (25 bp)
GAGATCGTTTTGAAGCTGAATTGGC
LOC_Os01g37770
Os.22790.1.A1_x_at--793--9011Chr01:21452767..21452791 (25 bp)
TGAATTGGCGCTACAGCGTGCCAAG
LOC_Os01g37770
Os.22790.1.A1_x_at--898--4651Chr01:21452614..21452776 (25 bp)
GCGTGCCAAGCTTATGCCAGAGTCA
LOC_Os01g37770
Os.22790.1.A1_x_at--140--1351Chr01:21452596..21452620 (25 bp)
AGAGTCAGCTCTTACAGCTCCGAAG
LOC_Os01g37770
Os.22790.1.A1_x_at--1139--1411Chr01:21452029..21452053 (25 bp)
AGAACAGTCAGGCAAGTCGGCCGCT
LOC_Os01g37770
Os.22790.1.A1_x_at--491--5151Chr01:21452018..21452042 (25 bp)
GCAAGTCGGCCGCTTAAGGCTTCAA
LOC_Os01g37770
Os.22790.1.A1_x_at--21--7351Chr01:21451933..21451957 (25 bp)
GTGAAGCCTACCATTTTGTGCGTTT
LOC_Os01g37770
Os.22790.1.A1_x_at--276--3592Chr02:19433738..19433954 (25 bp)
CATTTTGTGCGTTTTCCCATGAATT
NONE
Target Sequence 
AAGAGGAGGTCATTGTGCCCCATGGTGAAGCTGTTACTGTAGAGAGCTTTCTGGCTTGGAGAGATCGTTTTGAAGCTGAA
TTGGCGCTACAGCGTGCCAAGCTTATGCCAGAGTCAGCTCTTACAGCTCCGAAGGAAAAGAAACTCTCAGGAAGACAGTA
TTTTGAAAGTGGAAGGCATACAATGAAAGGAGCAAGTACCNCTGCTGACGAAGAGGAGGAAGAAGAGGAAGACATCGACT
TTGATGAAGACTTCGATGATGACGAAGAGGACATGCTTGAGCATTACTTAGCAGAACAGTCAGGCAAGTCGGCCGCTTAA
GGCTTCAANACCATAGAAGANNNNNNNNNGAGCAAAAATNTTTTAGGGAAGCNCAATGNGGTTATATAATATTATAGGTG
AAGCCTACCATTTTGTGCGTTTTCCCATGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22790.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis