Browse Element(s) Details


Os.19115.1.S1_at

Description gb:AK120139.1
DB_XREF= gi:37989762
TID=Os.19115.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.19115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADP-specific glutatamate dehydrogenase (B1144D11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027M08, full insert sequence.
FL= gb:AK120139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3776011/11Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37720Os.40855.2.S1_x_at8/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_x_at3/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_at1/111+21421725..21422612hypothetical protein
LOC_Os01g37740OsAffx.21224.1.S1_at11/111+21436104..21436938hypothetical protein
LOC_Os01g37740Os.51882.1.S1_at1/111+21436104..21436938hypothetical protein
LOC_Os01g37750Os.28823.1.S1_at10/111+21441604..21442638Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19115.1.S1_at--856--2831Chr01:21450615..21450639 (25 bp)
AAGTAGTTGTTGCTCCCGCAAAGGC
LOC_Os01g37760
Os.19115.1.S1_at--760--10811Chr01:21450854..21450878 (25 bp)
TTGGAGAACTCGAACTGAACCCTGA
LOC_Os01g37760
Os.19115.1.S1_at--1020--7991Chr01:21451242..21451266 (25 bp)
GGATGTGTCTAGTGAGGCTGCTCAA
LOC_Os01g37760
Os.19115.1.S1_at--108--2311Chr01:21451274..21451298 (25 bp)
AAATGGCGATTGTTGCAGTCCTGCA
LOC_Os01g37760
Os.19115.1.S1_at--567--5011Chr01:21451296..21451320 (25 bp)
GCAGGCATGATCTCACGGGAGCATA
LOC_Os01g37760
Os.19115.1.S1_at--975--7851Chr01:21451321..21451345 (25 bp)
GGTTTTTGTTTATACATGCCCTCAA
LOC_Os01g37760
Os.19115.1.S1_at--798--1111Chr01:21451354..21451378 (25 bp)
AGTGTTGAAAGCTTTCCCCTGGTAG
LOC_Os01g37760
Os.19115.1.S1_at--167--5391Chr01:21451384..21451408 (25 bp)
GAAGCTTGGGCCCATCGTAGAACAA
LOC_Os01g37760
Os.19115.1.S1_at--900--5351Chr01:21451413..21451437 (25 bp)
GAAGAGCCCTTTGTTGTTGTATGTA
LOC_Os01g37760
Os.19115.1.S1_at--909--6931Chr01:21451435..21451459 (25 bp)
GTAGTCTCGTAGATCACCGATGTAT
LOC_Os01g37760
Os.19115.1.S1_at--519--10271Chr01:21451486..21451510 (25 bp)
TTTGAACTATGTATTGCCCACTCTT
LOC_Os01g37760
Target Sequence 
AAGTAGTTGTTGCTCCCGCAAAGGCAACTGCCGCTGGTGGGGTAGCAGTTGGAGAACTCGAACTGAACCCTGAGTTCAGT
TTGATGCAGTGGTCAGTGGAGGATTTTGAGAACAAAATACAGGATGCGGTGAAACAAACATATGACAGATCTATCAAAGC
TGCTCAAGATTATGGAATCATGAAAGAGAACCCAGAGTCGTTGGTGCATGGTGCAAACATATGTGCGTTTCTTAATATTG
CACAAGCCATGACTGATCAAGGATGTGTCTAGTGAGGCTGCTCAATAAGCAGAAATGGCGATTGTTGCAGTCCTGCAGGC
ATGATCTCACGGGAGCATAGGTTTTTGTTTATACATGCCCTCAAATCAATTTAGTGTTGAAAGCTTTCCCCTGGTAGGAA
GCGAAGCTTGGGCCCATCGTAGAACAATATAGAAGAGCCCTTTGTTGTTGTATGTAGTCTCGTAGATCACCGATGTATTA
TCCATTCTTTCTTTTTTTTTTCTTTTTGAACTATGTATTGCCCACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis