Browse Element(s) Details


Os.38168.2.S1_at

Description gb:NM_195905.1
DB_XREF= gi:37533169
TID=Os.38168.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045C13.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2060010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20550Os.9663.1.S1_at10/1110+10026433..10027152expressed protein
LOC_Os10g20560OsAffx.6710.1.S1_at10/1110+10028725..10029871hypothetical protein
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.1.S1_x_at2/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.2.S1_x_at1/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20590OsAffx.30463.1.S1_at11/1110+10045464..10047228hypothetical protein
LOC_Os10g20600Os.38168.2.S1_x_at11/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.2.S1_at10/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.1.S1_at7/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18185.1.S1_s_at4/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18311.1.S1_at3/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38368.1.S1_s_at2/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20610Os.46813.2.S1_x_at11/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.1.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.2.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20619NANA10+10076232..10076576NA
LOC_Os10g20630Os.20462.1.S1_at11/1110+10079769..10087133Vacuolar sorting receptor 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38168.2.S1_at--1072--4931Chr10:10055636..10056038 (25 bp)
GCATTGGCGATCATAGAAGCTTCTG
LOC_Os10g20600
Os.38168.2.S1_at--654--3571NONE
CATAGAAGCTTCTGTGGCATTTGAT
NONE
Os.38168.2.S1_at--506--1451Chr10:10056028..10056052 (25 bp)
AGAAGCTTCTGTGGCATTTGATATG
LOC_Os10g20600
Os.38168.2.S1_at--501--4911Chr10:10056032..10056056 (25 bp)
GCTTCTGTGGCATTTGATATGATGA
LOC_Os10g20600
Os.38168.2.S1_at--300--8831Chr10:10056046..10056070 (25 bp)
TGATATGATGATGGCTTTCGAGAGA
LOC_Os10g20600
Os.38168.2.S1_at--306--6231Chr10:10056055..10056079 (25 bp)
GATGGCTTTCGAGAGAGATGCTACC
LOC_Os10g20600
Os.38168.2.S1_at--653--4851Chr10:10056074..10056098 (25 bp)
GCTACCATTGCCAGTGTTCCTTTTT
LOC_Os10g20600
Os.38168.2.S1_at--534--9951Chr10:10056076..10056100 (25 bp)
TACCATTGCCAGTGTTCCTTTTTCC
LOC_Os10g20600
Os.38168.2.S1_at--1083--71Chr10:10056080..10056104 (25 bp)
ATTGCCAGTGTTCCTTTTTCCGTAG
LOC_Os10g20600
Os.38168.2.S1_at--830--4411Chr10:10056083..10056107 (25 bp)
GCCAGTGTTCCTTTTTCCGTAGAAT
LOC_Os10g20600
Os.38168.2.S1_at--752--3451Chr10:10056085..10056109 (25 bp)
CAGTGTTCCTTTTTCCGTAGAATGC
LOC_Os10g20600
Target Sequence 
GCATTGGCGATCATAGAAGCTTCTGTGGCATTTGATATGATGATGGCTTTCGAGAGAGATGCTACCATTGCCAGTGTTCC
TTTTTCCGTAGAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38168.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis