Browse Element(s) Details


Os.38171.2.S1_at

Description gb:NM_184070.1
DB_XREF= gi:34895241
GEN=OJ1212_B09.20
TID=Os.38171.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1212_B09.20 (OJ1212_B09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1212_B09.20 (OJ1212_B09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0250011/11amidase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02420OsAffx.23090.4.S1_x_at4/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.2.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02420OsAffx.23090.1.S1_x_at1/111+778244..781226LRK14, putative
LOC_Os01g02430Os.778.2.S1_x_at9/111+782975..785421TAK14, putative, expressed
LOC_Os01g02430Os.778.1.S1_at3/111+782975..785421TAK14, putative, expressed
LOC_Os01g02440OsAffx.10881.2.S1_x_at11/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.2.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.4.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02440OsAffx.23090.1.S1_x_at1/111+786769..789213Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02450Os.34602.2.S1_x_at9/111+789890..790892hypothetical protein
LOC_Os01g02460OsAffx.23090.4.S1_x_at7/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.1.S1_x_at2/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02460OsAffx.23090.2.S1_x_at1/111+791301..792215receptor kinase LRK14, putative
LOC_Os01g02470NANA1+793644..794335hypothetical protein
LOC_Os01g02480NANA1+797700..798456retrotransposon, putative, centromere-specific
LOC_Os01g02490OsAffx.23089.1.S1_x_at10/111+801325..802501hypothetical protein
LOC_Os01g02500Os.38171.2.S1_at11/111+804652..806523amidase family protein, putative
LOC_Os01g02510NANA1+814344..814970retrotransposon protein, putative, unclassified, expressed
LOC_Os01g02520NANA1+818146..820809retrotransposon protein, putative, unclassified
LOC_Os01g02530NANA1+821426..827580retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004040molecular_functionamidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38171.2.S1_at--309--5611Chr01:804682..804706 (25 bp)
GACAAGTATCCTCTACATGCCGTTG
LOC_Os01g02500
Os.38171.2.S1_at--205--10151Chr01:804688..804712 (25 bp)
TATCCTCTACATGCCGTTGTGCCTA
LOC_Os01g02500
Os.38171.2.S1_at--705--6631Chr01:804703..804727 (25 bp)
GTTGTGCCTAGAGAGCGTCGCCAGC
LOC_Os01g02500
Os.38171.2.S1_at--764--9191Chr01:804707..804731 (25 bp)
TGCCTAGAGAGCGTCGCCAGCCGTT
LOC_Os01g02500
Os.38171.2.S1_at--478--4411Chr01:804722..804742 (21 bp)
GCCAGCCGTTGTCATTGCAGTCCAC
LOC_Os01g02500
Os.38171.2.S1_at--1071--3591Chr01:804734..805032 (25 bp)
CATTGCAGTCCACCCTGTCAGATTT
LOC_Os01g02500
Os.38171.2.S1_at--149--7111Chr01:805024..805048 (25 bp)
GTCAGATTTCCATCAATCTAGTTCT
LOC_Os01g02500
Os.38171.2.S1_at--289--451Chr01:805039..805063 (25 bp)
ATCTAGTTCTATTGTGCCTGAAAAA
LOC_Os01g02500
Os.38171.2.S1_at--81--351Chr01:805073..805093 (21 bp)
ATAAAACTGATTTTGCCGCGGTCAT
LOC_Os01g02500
Os.38171.2.S1_at--87--6551Chr01:805081..805252 (25 bp)
GATTTTGCCGCGGTCATCGCAGCTT
LOC_Os01g02500
Os.38171.2.S1_at--143--511Chr01:805491..805515 (25 bp)
ATCGTGAAGCGCGACCGGCTGAACA
LOC_Os01g02500
Target Sequence 
GACAAGTATCCTCTACATGCCGTTGTGCCTAGAGAGCGTCGCCAGCCGTTGTCATTGCAGTCCACCCTGTCAGATTTCCA
TCAATCTAGTTCTATTGTGCCTGAAAAAGAGAAACACATAAAACTGATTTTGCCGCGGTCATCGCAGCTTCTCCACAGCA
GATCCCGGCGCCCGCCACGGCCGACGACGTCGTCGGGCAAGATCACCCGCCTCAACGCGCTTCTCCACGCCGTCATCGAG
ATCGAGGTCAACTCCGACGCGCTCCAGCAGCCGGCGCGCGCCGACACCGAGCACGCCTCTGGCCACAGCTACTGCGGGCC
GCTCCACGGCGTCCCCATCCTCAAGGACAACATCGTGAAGCGCGACCGGCTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38171.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis