Browse Element(s) Details


Os.38326.1.A1_a_at

Description gb:AK064171.1
DB_XREF= gi:32974189
TID=Os.38326.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.4 (OJ1294_F06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A04, full insert sequence.
FL= gb:AK064171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38326.1.A1_a_at--1000--2511Chr01:42491117..42491141 (25 bp)
AACTTACCACCAATGTTACAGCAAA
LOC_Os01g72670
Os.38326.1.A1_a_at--677--2971Chr01:42491106..42491130 (25 bp)
AATGTTACAGCAAATTCTTAGTGGG
LOC_Os01g72670
Os.38326.1.A1_a_at--346--9371Chr01:42491059..42491083 (25 bp)
TCGACGTGACATTCTTTTGTGATTA
LOC_Os01g72670
Os.38326.1.A1_a_at--595--10251Chr01:42491044..42491068 (25 bp)
TTTGTGATTATATCAACCTCTTGAG
LOC_Os01g72670
Os.38326.1.A1_a_at--6--9311Chr01:42491032..42491056 (25 bp)
TCAACCTCTTGAGAAACTCCTACAA
LOC_Os01g72670
Os.38326.1.A1_a_at--1159--351Chr01:42490703..42490727 (25 bp)
ATAATATCTGGAAGTGGCCTTGTAA
LOC_Os01g72670
Os.38326.1.A1_a_at--643--7551Chr01:42490690..42490714 (25 bp)
GTGGCCTTGTAAAAAATAGCTTTAG
LOC_Os01g72670
Os.38326.1.A1_a_at--810--1551Chr01:42490673..42490697 (25 bp)
AGCTTTAGTGCTTTGCATTTGACCA
LOC_Os01g72670
Os.38326.1.A1_a_at--951--9731Chr01:42489647..42489671 (25 bp)
TCAATGATGGCGATGCCGGTGCCCG
LOC_Os01g72670
Os.38326.1.A1_a_at--1080--4131Chr01:42489624..42489648 (25 bp)
CGCGCTGACATTCTCAGGACATATG
LOC_Os01g72670
Os.38326.1.A1_a_at--991--9631Chr01:42489611..42489635 (25 bp)
TCAGGACATATGGTGCTGTTCTGCA
LOC_Os01g72670
Target Sequence 
AACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGA
TTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGG
ATGGCTTCATTAAACTGATAGATGGGTGGTCTCNTGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTAT
AATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCANNNNNNNNNNNNNNNNNNNNNNNNGAA
CACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38326.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis