Browse Element(s) Details


Os.38395.5.S1_at

Description gb:NM_186993.1
DB_XREF= gi:34901071
GEN=OJ1060_D03.4
TID=Os.38395.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative mutator-like transposase (OSJNBa0065J17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) mutator-like transposase-like protein (OJ1060_D03.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3958010/11hypothetical protein
LOC_Os02g306805/11transposon protein, putative, Mutator sub-class
LOC_Os01g332403/11Transposable element protein, putative, MuDR
LOC_Os06g358003/11Transposable element protein, putative, MuDR
LOC_Os02g439903/11hypothetical protein
LOC_Os06g191603/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g554503/11transposon protein, putative, Mutator sub-class
LOC_Os09g172002/11transposon protein, putative, Mutator sub-class
LOC_Os04g023702/11transposon protein, putative, Mutator sub-class
LOC_Os11g254102/11Transposable element protein, putative, MuDR
LOC_Os07g449802/11hypothetical protein
LOC_Os08g139702/11retrotransposon protein, putative, unclassified
LOC_Os04g247302/11transposon protein, putative, Mutator sub-class
LOC_Os04g024342/11Transposable element protein, putative, MuDR, expressed
LOC_Os03g478902/11Transposable element protein, putative, MuDR
LOC_Os04g418402/11transposon protein, putative, Mutator sub-class
LOC_Os11g323001/11hypothetical protein
LOC_Os05g397801/11transposon protein, putative, Mutator sub-class
LOC_Os07g226101/11transposon protein, putative, Mutator sub-class
LOC_Os08g319901/11hypothetical protein
LOC_Os06g160301/11Amidase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed
LOC_Os07g39570OsAffx.5579.1.S1_at11/117+23713141..23713665hypothetical protein
LOC_Os07g39580Os.38395.5.S1_at10/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.3.S1_x_at7/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.2.S1_x_at5/117+23715289..23718608hypothetical protein
LOC_Os07g39580OsAffx.9103.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39590Os.27414.1.S1_at11/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.1.S1_a_at10/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.2.S1_x_at7/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39600NANA7+23731554..23733011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38395.5.S1_at--184--99311Chr09:3475651..3475678 (25 bp)
TACGTACGGGCGTATCGGAGCGTAT
NONE
Os.38395.5.S1_at--308--6911Chr07:23716168..23716192 (25 bp)
GTATCGGAGCGTATCCGAATACGTA
LOC_Os07g39580
Os.38395.5.S1_at--148--6851Chr07:23716196..23716220 (25 bp)
GTATTCCTTTACGTATCCGATACGG
LOC_Os07g39580
Os.38395.5.S1_at--339--6452Chr07:23716214..23716238 (25 bp)
GATACGGATACGCTCCCAGCCGTAT
LOC_Os07g39580
Os.38395.5.S1_at--283--4351Chr07:23716229..23716253 (25 bp)
CCAGCCGTATCAGGGTATCCTAGGA
LOC_Os07g39580
Os.38395.5.S1_at--47--411NONE
ATCAGGGTATCCTAGGAGCCCGCGA
NONE
Os.38395.5.S1_at--739--10098Chr07:23717129..23717149 (21 bp)
TAGGAGCCCGCGATGCTTGTTCGAT
LOC_Os07g39580
Os.38395.5.S1_at--109--1672Chr07:23717129..23717153 (25 bp)
AGCCCGCGATGCTTGTTCGATTTGT
LOC_Os07g39580
Os.38395.5.S1_at--518--90715Chr11:13986979..13987003 (25 bp)
TGCTTGTTCGATTTGTTTGAGGACC
LOC_Os11g25410
Os.38395.5.S1_at--832--44913Chr07:23717175..23717199 (25 bp)
GCCGTCGAGAGTCGCCACATCGTCG
LOC_Os07g39580
Os.38395.5.S1_at--1116--60127Chr11:13987022..13987043 (22 bp)
GAGAGTCGCCACATCGTCGCCGGAG
LOC_Os11g25410
Target Sequence 
TACGTACGGGCGTATCGGAGCGTATCCGAATACGTATCCGTATTCCTTTACGTATCCGATACGGATACGCTCCCAGCCGT
ATCAGGGTATCCTAGGAGCCCGCGATGCTTGTTCGATTTGTTTGAGGACCACATCGCCAGCCGCCGTCGAGAGTCGCCAC
ATCGTCGCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38395.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis