Browse Element(s) Details


Os.38985.1.S1_at

Description gb:AY341858.1
DB_XREF= gi:33519203
TID=Os.38985.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38985 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
PROD=WRKY18
FL= gb:AY341858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0206011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02040OsAffx.28227.1.S1_x_at10/117+621772..622759hypothetical protein
LOC_Os07g02040Os.50959.1.S1_at1/117+621772..622759hypothetical protein
LOC_Os07g02050NANA7+626147..626607retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed
LOC_Os07g02070Os.47130.4.A1_x_at5/117+644519..646561retrotransposon protein, putative, unclassified
LOC_Os07g02080NANA7+655468..655809hypothetical protein
LOC_Os07g02090Os.25566.1.S1_at11/117+657076..661498calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38985.1.S1_at--969--1691Chr07:629332..629356 (25 bp)
ACCAACAACTGTACAGCAACCTGCA
LOC_Os07g02060
Os.38985.1.S1_at--240--5771Chr07:629295..629319 (25 bp)
GACGATGCCGCTTGCTGCTACTACT
LOC_Os07g02060
Os.38985.1.S1_at--485--9031Chr07:629236..629260 (25 bp)
TGCACTGCAACCATGAGCTGCAGGT
LOC_Os07g02060
Os.38985.1.S1_at--1003--8911Chr07:629223..629247 (25 bp)
TGAGCTGCAGGTTGTTGCCAGCTGC
LOC_Os07g02060
Os.38985.1.S1_at--728--7571Chr07:629141..629165 (25 bp)
GGGCTCCTTGATGACATGGTGCCTA
LOC_Os07g02060
Os.38985.1.S1_at--378--3611Chr07:629135..629159 (25 bp)
CTTGATGACATGGTGCCTAGGGCAA
LOC_Os07g02060
Os.38985.1.S1_at--269--6211Chr07:629109..629133 (25 bp)
GAGGCATGATGGGTAGTACAAGCAT
LOC_Os07g02060
Os.38985.1.S1_at--851--7031Chr07:629094..629118 (25 bp)
GTACAAGCATGCACACCATCGATTT
LOC_Os07g02060
Os.38985.1.S1_at--128--3651Chr07:629024..629048 (25 bp)
CTTCGATGGATTAATTAGCACGGTA
LOC_Os07g02060
Os.38985.1.S1_at--536--2831Chr07:629000..629024 (25 bp)
AAGTAGTTACTTATTCGTGTTGAGA
LOC_Os07g02060
Os.38985.1.S1_at--96--3671Chr07:628991..629015 (25 bp)
CTTATTCGTGTTGAGATCACTGGAA
LOC_Os07g02060
Target Sequence 
ACCAACAACTGTACAGCAACCTGCAGCCGCCGCCGCCGACGATGCCGCTTGCTGCTACTACTCCGGCGTCGTCGTCGTCG
CTGCTACAGCTGCCTCTGCACTGCAACCATGAGCTGCAGGTTGTTGCCAGCTGCGGCGGCTACCCGTCGTCGTCGTCGTC
GCCGCCGGCGAGTGTTCTTCCCGTCGACAAGGGGCTCCTTGATGACATGGTGCCTAGGGCAATGAGGCATGATGGGTAGT
ACAAGCATGCACACCATCGATTTAATTTGGGGTTAATTTGTAGCCTAATTATTAATCTTAATTAGCTGCTTCGATGGATT
AATTAGCACGGTAAGTAGTTACTTATTCGTGTTGAGATCACTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis