Browse Element(s) Details


Os.39110.1.S1_s_at

Description gb:CF278034
DB_XREF= gi:33655420
DB_XREF=14ETL--03-M14.g1
CLONE=14ETL--03-M14
TID=Os.39110.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506A10.21 (P0506A10.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6735011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39110.1.S1_s_at--417--7611Chr01:39427860..39428040 (25 bp)
GGGAACCAGAAGCTTTCAAGTATCT
LOC_Os01g67350
Os.39110.1.S1_s_at--242--6911Chr01:39428035..39428059 (25 bp)
GTATCTGAAGACAAGCGACAGTGAT
LOC_Os01g67350
Os.39110.1.S1_s_at--260--1091Chr01:39428070..39428094 (25 bp)
AGGGCTCCAAGAAGGTGTCTGAAGA
LOC_Os01g67350
Os.39110.1.S1_s_at--1002--2831Chr01:39428195..39428219 (25 bp)
AAGTCTACTGTCCAGTATGTCGAAA
LOC_Os01g67350
Os.39110.1.S1_s_at--352--5011Chr01:39428334..39428358 (25 bp)
GCAGGCAGTGTTAGCTCGGTATATT
LOC_Os01g67350
Os.39110.1.S1_s_at--323--311Chr01:39428393..39428417 (25 bp)
ATAGCCAACTAGTCTGCAACTATGT
LOC_Os01g67350
Os.39110.1.S1_s_at--1031--151Chr01:39428448..39428472 (25 bp)
ATTATAGCCAACTAGTGTGCAACTA
LOC_Os01g67350
Os.39110.1.S1_s_at--621--5151Chr01:39428488..39428512 (25 bp)
GCAACTAGTGTGCTTTCTGGTTAGA
LOC_Os01g67350
Os.39110.1.S1_s_at--128--7171Chr01:39428497..39428521 (25 bp)
GTGCTTTCTGGTTAGAAACCCGTAG
LOC_Os01g67350
Os.39110.1.S1_s_at--446--7891Chr01:39428538..39428562 (25 bp)
GGTTCGTTGAACCAGTGGTGCCTTT
LOC_Os01g67350
Os.39110.1.S1_s_at--439--4351Chr01:39428549..39428573 (25 bp)
CCAGTGGTGCCTTTTGATTATATAT
LOC_Os01g67350
Target Sequence 
GGGAACCAGAAGCTTTCAAGTATCTGAAGACAAGCGACAGTGATGAGAGGATGGAGGGCTCCAAGAAGGTGTCTGAAGAC
GAGGAGCAGGCCCTGAAGGTGAGATTCCAAGAGTGGATGAACAAGTTCAACCGTAATTACAAAGACGAGGCAGAGAAGGC
TTATCGCTTTGAGGTATTCAAGTCTACTGTCCAGTATGTCGAAAAGTTCAATGCTGAACAGNTGNNNAANTNNGNTNNNN
GCNNNNGNNNANNAGNTNNNNNNANNNNTNNNNNNCNNNNTGTGNNGNNAGTCTCGAACAAGTTTTGTGGCAAAAGAAGC
AGGCAGTGTTAGCTCGGTATATTATTATTATAGGGGCGTGTTGGCTATATTACTATTATAGCCAACTAGTCTGCAACTAT
GTAAAAAAACAGCAACTATATTTATTATTATTATTATAGCCAACTAGTGTGCAACTATGAAAAATAACAACAGCAACTAG
TGTGCTTTCTGGTTAGAAACCCGTAGAGATATAAGTGTAAGTGGTTCGTTGAACCAGTGGTGCCTTTTGATTATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39110.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis