Browse Element(s) Details


OsAffx.11770.1.S1_at

Description tigr:9629.m06688
TID=OsAffx.11770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g673209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11770.1.S1_at--467--3911Chr01:39406842..39406893 (25 bp)
CTGGCCCCGATTTTGATTCTGATAA
LOC_Os01g67320
OsAffx.11770.1.S1_at--608--9751Chr01:39406891..39406915 (25 bp)
TAATGTTCTAGGTTTGGGATTGTGT
LOC_Os01g67320
OsAffx.11770.1.S1_at--135--331Chr01:39406922..39406946 (25 bp)
ATACTTGATTACTTCTTGGTTGTGA
LOC_Os01g67320
OsAffx.11770.1.S1_at--18--6551Chr01:39406928..39406948 (21 bp)
GATTACTTCTTGGTTGTGAAGCGAA
LOC_Os01g67320
OsAffx.11770.1.S1_at--617--6891Chr01:39407256..39407280 (25 bp)
GTATAGACTTAGTTGATCGTGAAAG
LOC_Os01g67320
OsAffx.11770.1.S1_at--1112--31Chr01:39407282..39407306 (25 bp)
ATTGATTATCCTATGTTCTACCCAG
LOC_Os01g67320
OsAffx.11770.1.S1_at--709--151Chr01:39407286..39407310 (25 bp)
ATTATCCTATGTTCTACCCAGGTAG
LOC_Os01g67320
OsAffx.11770.1.S1_at--482--9531NONE
TCTACCCAGGTAGAGCACTCAAGAT
NONE
OsAffx.11770.1.S1_at--698--5931Chr01:39408197..39408221 (25 bp)
GAGCACTCAAGATAAAAGACAGATT
LOC_Os01g67320
OsAffx.11770.1.S1_at--428--6751Chr01:39408228..39408251 (24 bp)
GTTCATGATGTCTCTTTTCTTAGTG
LOC_Os01g67320
OsAffx.11770.1.S1_at--1158--7151NONE
GTCTCTTTTCTTAGTGAGCAAATAC
NONE
Target Sequence 
CTGGCCCCGATTTTGATTCTGATAATGTTCTAGGTTTGGGATTGTGTGAATATATACTTGATTACTTCTTGGTTGTGAAG
CGAAGTAGTATAGACTTAGTTGATCGTGAAAGAATTGATTATCCTATGTTCTACCCAGGTAGAGCACTCAAGATAAAAGA
CAGATTTGCTTTGTTCATGATGTCTCTTTTCTTAGTGAGCAAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis