Browse Element(s) Details


Os.10859.1.S1_a_at

Description gb:AK103766.1
DB_XREF= gi:32988975
TID=Os.10859.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0674H09.27 (P0674H09.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143H20, full insert sequence.
FL= gb:AK103766.1 gb:AK105381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6729011/11cyclin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10859.1.S1_a_at--355--4911Chr01:39379912..39379936 (25 bp)
GCTTCATCAGATGTTCTAAACGTCA
LOC_Os01g67290
Os.10859.1.S1_a_at--412--3091Chr01:39379768..39379904 (25 bp)
AATAGAATCGGTTCATGAGACAGCA
LOC_Os01g67290
Os.10859.1.S1_a_at--539--2931Chr01:39379744..39379768 (25 bp)
AAGGCAGGTTGCTAATGCTCCAGTT
LOC_Os01g67290
Os.10859.1.S1_a_at--768--9091Chr01:39379729..39379753 (25 bp)
TGCTCCAGTTTCTGCCAACCTTGTA
LOC_Os01g67290
Os.10859.1.S1_a_at--214--3251Chr01:39379714..39379738 (25 bp)
CAACCTTGTACCCTACGATCAAATG
LOC_Os01g67290
Os.10859.1.S1_a_at--555--3191Chr01:39379683..39379707 (25 bp)
CAATGCGAAGCCCTAGTCATGGAGA
LOC_Os01g67290
Os.10859.1.S1_a_at--255--4551Chr01:39379674..39379698 (25 bp)
GCCCTAGTCATGGAGAAGCAACAGA
LOC_Os01g67290
Os.10859.1.S1_a_at--867--3411Chr01:39379653..39379677 (25 bp)
CAGAAGATGTCTGTTCTCCTGAGCT
LOC_Os01g67290
Os.10859.1.S1_a_at--1023--5911Chr01:39379633..39379657 (25 bp)
GAGCTTCAAACACTCGAGGACCGAT
LOC_Os01g67290
Os.10859.1.S1_a_at--195--2471Chr01:39379625..39379649 (25 bp)
AACACTCGAGGACCGATTCCCGTGG
LOC_Os01g67290
Os.10859.1.S1_a_at--864--4191Chr01:39379607..39379631 (25 bp)
CCCGTGGCTCGACTGCAGAAAATGG
LOC_Os01g67290
Target Sequence 
GCTTCATCAGATGTTCTAAACGTCAATCAACTAATAGAATCGGTTCATGAGACAGCAAGGCAGGTTGCTAATGCTCCAGT
TTCTGCCAACCTTGTACCCTACGATCAAATGAAGAGCCAATGCGAAGCCCTAGTCATGGAGAAGCAACAGAAGATGTCTG
TTCTCCTGAGCTTCAAACACTCGAGGACCGATTCCCGTGGCTCGACTGCAGAAAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10859.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis