Browse Element(s) Details


OsAffx.23952.1.S1_at

Description tigr:9629.m06680
TID=OsAffx.23952.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6726011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23952.1.S1_at--158--4691Chr01:39368758..39368782 (25 bp)
GCGGAAGCGCTGTCCAGGTCCGACA
LOC_Os01g67260
OsAffx.23952.1.S1_at--839--5871Chr01:39368704..39368728 (25 bp)
GAGCGGATTTTCGATGCGGCGTCCA
LOC_Os01g67260
OsAffx.23952.1.S1_at--188--3491Chr01:39368655..39368679 (25 bp)
CAGGAGCGTCGGGTCTCTCAGATGC
LOC_Os01g67260
OsAffx.23952.1.S1_at--63--7711Chr01:39368645..39368669 (25 bp)
GGGTCTCTCAGATGCGGCCCAAAAT
LOC_Os01g67260
OsAffx.23952.1.S1_at--59--4191Chr01:39368517..39368541 (25 bp)
CCCTTCTTGGGTCATGTCAGGACAA
LOC_Os01g67260
OsAffx.23952.1.S1_at--329--2011Chr01:39368433..39368457 (25 bp)
ACTCTGATCCACTTCAGCAATCGGA
LOC_Os01g67260
OsAffx.23952.1.S1_at--850--1431Chr01:39368137..39368161 (25 bp)
AGAACTCCTCAATTATGGTTTTCTT
LOC_Os01g67260
OsAffx.23952.1.S1_at--1044--1791Chr01:39368095..39368119 (25 bp)
ACCCTATCTAGGCTCTGGACTGAGG
LOC_Os01g67260
OsAffx.23952.1.S1_at--889--8151Chr01:39368072..39368096 (25 bp)
GGAAAACAGTGTCACCCTGCAGCCC
LOC_Os01g67260
OsAffx.23952.1.S1_at--948--2011Chr01:39368036..39368060 (25 bp)
ACTACATCTTCTCGTCGTGGTGGAT
LOC_Os01g67260
OsAffx.23952.1.S1_at--656--7511Chr01:39368022..39368041 (20 bp)
GTGGATTTGCATTGTTGTCGTCGAT
LOC_Os01g67260
Target Sequence 
GCGGAAGCGCTGTCCAGGTCCGACACCGACGCGGAGCCGAGGCGGCGCGCCGCCGAGCGGATTTTCGATGCGGCGTCCAT
GGTGGCCAAGGAGGCCGACGCGTCAGGAGCGTCGGGTCTCTCAGATGCGGCCCAAAATCTGACCTGCGCGACCTACGCGT
TCTCGGTAGCCGCCTCGGGATGGGGGTCCTTGCCGGAGTCCAGCACGAGCGGGAGGGACGCCGGCGACCTCCTAACCGAG
CCCCTTCTTGGGTCATGTCAGGACAAGAACGAGAAGATGACCGGCGAGGGCAAGGACTTCAGCGAGATGAGGAATAGTGC
AGCGGACTCTGATCCACTTCAGCAATCGGAGNTNNNNNANNNNNNNNTNTTNNGNNNNTGNAAAGAACTCCTCAATTATG
GTTTTCTTGGAGGTCCTGCCCTCCTACCCTATCTAGGCTCTGGACTGAGGAAAACAGTGTCACCCTGCAGCCCGTCTGTC
TTCCACTACATCTTCTCGTCGTGGTGGATTTGCATTGTTGTCGTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis